NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0311364_11802095

Scaffold Ga0311364_11802095


Overview

Basic Information
Taxon OID3300031521 Open in IMG/M
Scaffold IDGa0311364_11802095 Open in IMG/M
Source Dataset NameIII_Fen_E2 coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)602
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location NameSweden: Abisko, Stordalen Mire
CoordinatesLat. (o)68.3532Long. (o)19.0469Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001837Metagenome / Metatranscriptome628Y
F036860Metagenome / Metatranscriptome169Y

Sequences

Protein IDFamilyRBSSequence
Ga0311364_118020951F001837GAGLSRHRFEAYLDKVFGFSQLVGALPEGRQSPTHPWHKVFDAVFLAAAMQVPSLLQIEAECRRGALAKRIGPISDDTIGYALQRQSPEPVFALGCEIARRLKRNGILRSDWSRGLVVAAVDGIEICSSFARCCDACMQREVQHKVRG
Ga0311364_118020952F036860N/ASVLVEGKPKTFNIPATLVPRVRQQVEMRRRFDAAAATICGINLRRFLKDKENQ

 ⦗Top⦘



© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.