NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307488_10235501

Scaffold Ga0307488_10235501


Overview

Basic Information
Taxon OID3300031519 Open in IMG/M
Scaffold IDGa0307488_10235501 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1216
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F092750Metagenome107N
F094421Metagenome / Metatranscriptome106N
F094422Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0307488_102355012F092750N/AMKILTPKEKAIDIIHKICKFNMEYSNSLAIVLVNEIIKETDNSNYWERVKSEIVALNQ
Ga0307488_102355013F094421GAGMNLETLEILKKDIIRQIQYDNIKIVRMEQKLKEVEEKILKLKNQ
Ga0307488_102355014F094422N/AMKKYIIESDTPLFDFTLEYPRISIDVEYASTLSKFALLSYLDEEFMFYHERIDR

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