Scaffold Ga0307488_10119281

Overview

Basic Information

• Taxon OID: 3300031519
• Scaffold ID: Ga0307488_10119281
• Source Dataset Name: Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1893
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location

• Location Name: USA: Alaska
• Coordinates
  • Lat. (^o): 71.3731
  • Long. (^o): -156.5049
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002598	Metagenome / Metatranscriptome	544	Y
F004840	Metagenome / Metatranscriptome	421	Y
F008132	Metagenome / Metatranscriptome	338	Y
F024319	Metagenome / Metatranscriptome	206	Y
F085708	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307488_101192811	F024319	AGGAGG	MTNRIWESRNDFMQESDAKRLGYVACSAGCGRVTAWTLCVMCGGNYATHNTLGVR
Ga0307488_101192813	F008132	GAGG	MTKWDTIQADVQDMYAHLQEQEAYEQALAEEEDVFGFAKAIQIDHLTDEQLDEVFNMFGD
Ga0307488_101192814	F085708	GGAG	MTTNRLLTTAVQLGIGIPALYMLRLMWREIVSDFREWDKSH
Ga0307488_101192815	F002598	AGAAGG	MATKLYTIEALLIGKTYRSNSRHFSGEIVSAEARPEIWYGEKTEAYLIEVNAGGLRNKFATIAVKVGE
Ga0307488_101192816	F000447	AGG	MGYIEIFRLDEEGAGWVDLSEATPNELLEIEIGLFQEGAI
Ga0307488_101192818	F004840	AGGA	MYKVTNQYDFEESPHWSKEYESEFEAWKSFFSFTDWGMANEYSTVNIYTPSLKCYTKVFYRTGEVVTK