Scaffold Ga0308392_1002061

Overview

Basic Information

• Taxon OID: 3300031517
• Scaffold ID: Ga0308392_1002061
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7732
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (80.00%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F066811	Metagenome / Metatranscriptome	126	N
F069556	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308392_10020611	F069556	N/A	VNGWHPHYHALIYVSAGLPYLTPVCVALSERWSQVAGADWRADVRQVARDGVASVARYLTTDGVAGASYEVASPAAKVPAGRAYPEILYDYARYRSSADAALIYEYAAALHGVHHLTISPRLRKLYDFTDPASGWSQIADEDVIALLDSDEWLSILNSGEERNLLDDFAQLC
Ga0308392_100206111	F002229	GGAGG	MVMLLTVDGVEEIDYTPSDAEIRASLDDLGLYGMVLGVVTWMRLSSGAGWWTVLFGKRLVVTLAPVGWCWVMDGLGNRGYWSATLSAVVADVCAMYGGCIED
Ga0308392_100206112	F002795	GGAGG	MATNDGLVLRGMVAAYREFVARKDGKLYRVATVFGDLVSGETVLCAVDGYDVFVDSPYARGEMVELPARMQFLRDNSGRPVIRLYVDEGVR
Ga0308392_100206113	F002372	AGGGGG	MMPTRREDALWTVVHQRASHLRALLDGLDDVDVSIAYELHYYPYAIVELLRIRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308392_10020613	F066811	AGGAGG	MEFNSQPQFNAPGMTDILNAATSIFNPFVSVIALAIGVTLGARMLGRIVRLF
Ga0308392_10020615	F000855	GAGG	MEWLEDFWSKIVSWFDELSAGVHNGIIAWINSLVDIWNGWMDSLLHPAQAMPSNPALRFIVDWLGGMVDYTRLMYMLVDYVAYAQIVQQALLAQLAIVAVGLGFRAWLVIRRVVLVS
Ga0308392_10020616	F001381	GAG	MQYVIATLYVLIWLALAAAAALVLPRWALPVALVQLAVAYVMLRSWLTAAAGGDDGA
Ga0308392_10020618	F002978	AGG	VSNLRDWRVTIVPWADRRLWFVQARRGRRVVWGVVYDAADPDSVALARRAIATLRAAGADCSALPHPLPGTTPPGA
Ga0308392_10020619	F004024	AGGA	MHSERDYLRQSSLNDDDMMFLDARATLAAALARAVVGYSDSRVRALAWLAVATPRLYDRVAPIVESAAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER