NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308392_1000117

Scaffold Ga0308392_1000117


Overview

Basic Information
Taxon OID3300031517 Open in IMG/M
Scaffold IDGa0308392_1000117 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30508
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)35 (87.50%)
Novel Protein Genes16 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)15 (93.75%)
Associated Families16

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F005028Metagenome / Metatranscriptome414Y
F005631Metagenome / Metatranscriptome394N
F006252Metagenome / Metatranscriptome377Y
F006418Metagenome / Metatranscriptome373Y
F007404Metagenome / Metatranscriptome351Y
F010840Metagenome / Metatranscriptome298Y
F016100Metagenome / Metatranscriptome249Y
F025895Metagenome / Metatranscriptome199Y
F037517Metagenome / Metatranscriptome167Y
F043176Metagenome / Metatranscriptome156Y
F044842Metagenome / Metatranscriptome153Y
F048124Metagenome / Metatranscriptome148Y
F067304Metagenome / Metatranscriptome125Y
F083527Metagenome / Metatranscriptome112N
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308392_10001171F083527GGAGGMNTFFGVQIQKPQPLVDAIRAAVAAKRRPVAARDRVYASEISACDRRITFGLLGCEPDAPRADSPSALIGDAIHAHLEALLVEAFPGRVETEVRVVGGAI
Ga0308392_100011712F037517GGAGGMRVRQIGTLVFDANTNIIVDANNQDAPGIGFNANALFDPQPFAAEIAFRRATRQQALNAVNAFARELYSYAQRRQGGRLANAGGVAVVAEDATGAASLLSYLRDGTVTLLGVETTANGVLARVRVTGTLINPFLNYTFAQTDVTSLKPYERRVITLSETSDAYLYKSSLLYGVSNMTGLYNALFAVEELESATGASRIQAISPATVSSGITMQNQSWSAGWQTLTRAFFASATSGTITYTINPAAFPQDVYRLFIEIFCPTTPPVNARYLVSWDGQPQIAETISGDRSWYTPALFTRSNETFPLTLEIQSVPTGTLVMPIVLIPTDGVSVWNVITSPTLSYFHILDLQSAFSRPFETTPTGTVYGAPGLISSRYIAVFNGVMTTTITSASATLTIRARQIEPAAFA
Ga0308392_100011714F067304N/AMRCDQRLMPPLRAQRRKMLRDAPERLTIKRVGRAVVDVSAQHQFCVRGGQRREVEQT
Ga0308392_100011717F002970GGAGMSYSSVTDIIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVARLRFAWLARGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLIRAPSS
Ga0308392_100011719F105262AGGAGGMLVQETIQPLLRYFNAAASGADTPVVSIVNAQAVRIVAHTGTVTGSASLQVHVNDTNNTNNSTQLTDKAIASLASNRTYEIFVTGAEAYAAKTHASHMFVRIAGTGTAPIAIEISAFPARDVPASLPTDWTRVL
Ga0308392_100011722F005631GGAGMRVSVAVDLDNALRKLLPREVRIESALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARYVYGMPQARVHRGRWASLRDAAEAAKKEAIAVLKERGR
Ga0308392_100011726F010840AGGAGGVNLPFSQPLDKVTFGALAAATIIVLTWALREFVGIDLPAEVQAALAVIFGYVVSYHIPLTEAEAEAIARKYYKYK
Ga0308392_100011727F006418AGGAGMPKRRSQPKPQPAREIVIAEGEDYRIIFDRETKDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARRGE
Ga0308392_100011728F043176AGGAGGMQNYRIWEGERTFLPGDDTSKYTVIEIVAEELGWFEDVNPDGFSCTAYYVYRTESGEIIINVVNKNYGIGEPNYGTIYRFSSLEEAAQSEQRYALSELRLI
Ga0308392_10001173F006252AGGGGGVRSFDEQAAFGLPYERLIAQTAALLLYPHRLDLTLVRLDAYAPLDYLLLDGDCPIAALEVKRRSVRSDAYRTTILPQSVVDAAKRLTIPVYAAILFLDGLAIFDVLRTPSTARWLRTRRGALRKHREYDVRERMVRLEAVYQPPRRSA
Ga0308392_100011732F048124AGGAMATISIWRGYRHWNWDEENDYEVVTYEDARELGAVRFNDEEADIQYRIIEWDEGIVIFYVKREGHYCEAEIYEYPSLEEAAKEYRFVLKKAGVIQ
Ga0308392_100011735F044842AGGAGGVEDIELWCGVRGNTFRSTQCVRFVGEFLAVVDVAHADEWVERCVLYRTEDGRVAVHQMRLSLLDDGIDIAEAYILPALDAGEGERGGRV
Ga0308392_100011737F025895GGTGGMSDVIAWIIAGGVILALVNSNVADGLLSALDLSDNLRRAVDWARGVRGVPAGVASACFFILAYVFGALAYRYDLVPTWRFIQPIAADVLATGAEWLTLFALFLTLLPTLIELATVGLVQRDIKALQWMVYFFIFFDIVTDYREAVALVDVWQRGGLFAPLPDALEGAAAVLAKVGWTFAASFAFEFLTILCAVTALLLAANVRAPGGGGGGR
Ga0308392_100011739F005028GGAMRDDDLRAAMSFFAERLRGVDGDETRLLRWTRHKLRNDAQAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPDAATEAHLGLCWRLDDVVLTVVSDLHAAAKRLRQPYRDLAAVCLKWGYVHETVVQLLVKELERKHRNVVED
Ga0308392_10001176F016100AGGAGGMLKSVKIERFKEYSELMRVVSRSEACPATNKDRIVPLNYELLIGSHLPESDWHRLGALVVALFRSFAVVDVEVWQTDAGIWVADALVDFGGVRRLRKGEGDTPLHAVIELITDIQRY
Ga0308392_10001179F007404GGAGGVDIIEVFQLLAAGHNGLTALDYAWNALFGAIGAATAYLADTNGEVFLPRYDAEQHSIELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPLLIDKIAGFVERRRK
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