Scaffold Ga0308412_1061122

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1061122
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1249
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012676	Metagenome / Metatranscriptome	278	Y
F015735	Metagenome / Metatranscriptome	252	Y
F090437	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10611221	F012676	N/A	KLAARWDGSPMSLTHPEHGWIRFLEIRNIAHATYLDEPPGWRIVVEDEERFMQLVPTLQKYGIYGIHEWTYDIH
Ga0308412_10611222	F015735	GAGG	MVVYHHWSVEWHPRDIDPPGGLPRIVCIARRAVVDPFAGPGPFPSDIDRAVRFWNLVASGGARDHGAGYEVVWRLSVVAGDVDGDAPDGAWSDDPVYRARRRLLRWIMRSQCPIPALADHFAVEHFLGRPEYFGALE
Ga0308412_10611223	F090437	N/A	AIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVEEYRADPSMGGTEG