Metagenome / Metatranscriptome Family F090437

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F090437
Family Type	Metagenome / Metatranscriptome
Number of Sequences	108
Average Sequence Length	50 residues
Representative Sequence	DAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEGV
Number of Associated Samples	47
Number of Associated Scaffolds	108

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.30 %
% of genes from short scaffolds (< 2000 bps)	97.22 %
Associated GOLD sequencing projects	42
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.963 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat (75.000 % of family members)
Environment Ontology (ENVO)	Unclassified (99.074 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (75.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 52.94% β-sheet: 0.00% Coil/Unstructured: 47.06%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 108 Family Scaffolds
PF00145	DNA_methylase	58.33
PF01507	PAPS_reduct	0.93
PF13659	Obsolete Pfam Family	0.93
PF01555	N6_N4_Mtase	0.93

COG ID	Name	Functional Category	% Frequency in 108 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	58.33
COG0863	DNA modification methylase	Replication, recombination and repair [L]	0.93
COG1041	tRNA G10 N-methylase Trm11	Translation, ribosomal structure and biogenesis [J]	0.93
COG2189	Adenine specific DNA methylase Mod	Replication, recombination and repair [L]	0.93

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.96 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.96 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.96 %
Unclassified	root	N/A	37.04 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Chloroflexia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Chloroflexales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Chloroflexineae	suborder	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Chloroflexaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Chloroflexaceae	0.93 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.04 %
Chloroflexus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Chloroflexaceae → Chloroflexus	0.93 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002510\|JGI24186J35511_1033243	All Organisms → cellular organisms → Bacteria	802	Open in IMG/M
3300003688\|Ga0061020_1080729	All Organisms → cellular organisms → Bacteria	690	Open in IMG/M
3300005251\|Ga0068634_1174813	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300005452\|Ga0068706_1071301	All Organisms → cellular organisms → Bacteria	613	Open in IMG/M
3300005452\|Ga0068706_1074991	All Organisms → cellular organisms → Bacteria	594	Open in IMG/M
3300005452\|Ga0068706_1076688	Not Available	587	Open in IMG/M
3300005453\|Ga0068705_10055648	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1233	Open in IMG/M
3300005453\|Ga0068705_10094959	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300005495\|Ga0068666_1009835	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300006380\|Ga0068664_1011731	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300006380\|Ga0068664_1058167	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300006380\|Ga0068664_1353831	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300006380\|Ga0068664_1363261	Not Available	625	Open in IMG/M
3300010023\|Ga0130028_100900	Not Available	1554	Open in IMG/M
3300010186\|Ga0124916_1150711	Not Available	677	Open in IMG/M
3300010194\|Ga0124921_1216703	All Organisms → cellular organisms → Bacteria	701	Open in IMG/M
3300010195\|Ga0124911_1060439	Not Available	699	Open in IMG/M
3300010196\|Ga0124923_1074604	Not Available	754	Open in IMG/M
3300010254\|Ga0124938_1086856	All Organisms → cellular organisms → Bacteria	763	Open in IMG/M
3300010272\|Ga0124912_1269583	All Organisms → cellular organisms → Bacteria	512	Open in IMG/M
3300026237\|Ga0209750_1030758	All Organisms → cellular organisms → Bacteria	1065	Open in IMG/M
3300026237\|Ga0209750_1068406	Not Available	626	Open in IMG/M
3300026280\|Ga0209017_10035237	All Organisms → cellular organisms → Bacteria	1254	Open in IMG/M
3300026280\|Ga0209017_10075676	Not Available	680	Open in IMG/M
3300026280\|Ga0209017_10091818	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300027279\|Ga0209691_1035846	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300027279\|Ga0209691_1065349	Not Available	657	Open in IMG/M
3300031245\|Ga0308395_1101672	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300031245\|Ga0308395_1120133	Not Available	585	Open in IMG/M
3300031508\|Ga0308394_1043439	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M
3300031509\|Ga0308399_1016868	All Organisms → cellular organisms → Bacteria	1906	Open in IMG/M
3300031509\|Ga0308399_1058885	Not Available	826	Open in IMG/M
3300031509\|Ga0308399_1089410	All Organisms → cellular organisms → Bacteria	622	Open in IMG/M
3300031509\|Ga0308399_1111742	All Organisms → cellular organisms → Bacteria	536	Open in IMG/M
3300031512\|Ga0308397_1053035	All Organisms → cellular organisms → Bacteria	980	Open in IMG/M
3300031513\|Ga0308412_1042309	All Organisms → cellular organisms → Bacteria	1641	Open in IMG/M
3300031513\|Ga0308412_1061122	Not Available	1249	Open in IMG/M
3300031513\|Ga0308412_1134581	Not Available	707	Open in IMG/M
3300031513\|Ga0308412_1138861	Not Available	692	Open in IMG/M
3300031513\|Ga0308412_1159578	Not Available	630	Open in IMG/M
3300031513\|Ga0308412_1161276	Not Available	625	Open in IMG/M
3300031513\|Ga0308412_1190385	Not Available	558	Open in IMG/M
3300031514\|Ga0308390_1027216	All Organisms → cellular organisms → Bacteria	1761	Open in IMG/M
3300031514\|Ga0308390_1040715	All Organisms → cellular organisms → Bacteria	1270	Open in IMG/M
3300031514\|Ga0308390_1112473	Not Available	570	Open in IMG/M
3300031515\|Ga0308396_1042502	All Organisms → cellular organisms → Bacteria	1052	Open in IMG/M
3300031516\|Ga0308398_1125622	Not Available	540	Open in IMG/M
3300031517\|Ga0308392_1013850	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300031517\|Ga0308392_1018812	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300031568\|Ga0308393_1024171	All Organisms → cellular organisms → Bacteria	1603	Open in IMG/M
3300031568\|Ga0308393_1060352	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300031767\|Ga0308401_1085413	All Organisms → cellular organisms → Bacteria	611	Open in IMG/M
3300031783\|Ga0308418_1006563	All Organisms → cellular organisms → Bacteria	4628	Open in IMG/M
3300031783\|Ga0308418_1113892	All Organisms → cellular organisms → Bacteria	582	Open in IMG/M
3300031783\|Ga0308418_1133001	Not Available	525	Open in IMG/M
3300031812\|Ga0308411_10075388	All Organisms → cellular organisms → Bacteria	1384	Open in IMG/M
3300031812\|Ga0308411_10104847	Not Available	1076	Open in IMG/M
3300031812\|Ga0308411_10111768	All Organisms → cellular organisms → Bacteria	1026	Open in IMG/M
3300031830\|Ga0308409_1083066	Not Available	732	Open in IMG/M
3300031875\|Ga0308405_1053151	Not Available	1105	Open in IMG/M
3300031875\|Ga0308405_1093040	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300031875\|Ga0308405_1132212	Not Available	582	Open in IMG/M
3300031875\|Ga0308405_1147264	Not Available	541	Open in IMG/M
3300031875\|Ga0308405_1156392	All Organisms → cellular organisms → Bacteria	519	Open in IMG/M
3300031878\|Ga0308404_1023418	Not Available	1349	Open in IMG/M
3300031878\|Ga0308404_1031164	Not Available	1135	Open in IMG/M
3300031878\|Ga0308404_1066447	Not Available	716	Open in IMG/M
3300031948\|Ga0308406_1037023	All Organisms → cellular organisms → Bacteria	1159	Open in IMG/M
3300031948\|Ga0308406_1067609	All Organisms → cellular organisms → Bacteria	769	Open in IMG/M
3300031948\|Ga0308406_1080966	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300031948\|Ga0308406_1098695	Not Available	595	Open in IMG/M
3300031950\|Ga0308417_1041156	All Organisms → cellular organisms → Bacteria	2007	Open in IMG/M
3300031950\|Ga0308417_1044701	All Organisms → cellular organisms → Bacteria	1889	Open in IMG/M
3300031950\|Ga0308417_1057862	Not Available	1555	Open in IMG/M
3300031950\|Ga0308417_1062107	All Organisms → cellular organisms → Bacteria	1475	Open in IMG/M
3300031950\|Ga0308417_1080337	All Organisms → cellular organisms → Bacteria	1216	Open in IMG/M
3300031950\|Ga0308417_1100064	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300031950\|Ga0308417_1101702	All Organisms → cellular organisms → Bacteria	1021	Open in IMG/M
3300031950\|Ga0308417_1101963	All Organisms → cellular organisms → Bacteria	1019	Open in IMG/M
3300031950\|Ga0308417_1129312	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia → Chloroflexales → Chloroflexineae → Chloroflexaceae → Chloroflexus	857	Open in IMG/M
3300031950\|Ga0308417_1131940	Not Available	844	Open in IMG/M
3300031950\|Ga0308417_1132101	All Organisms → cellular organisms → Bacteria	843	Open in IMG/M
3300031950\|Ga0308417_1147803	All Organisms → cellular organisms → Bacteria	776	Open in IMG/M
3300031950\|Ga0308417_1152075	Not Available	760	Open in IMG/M
3300031950\|Ga0308417_1196913	Not Available	632	Open in IMG/M
3300031958\|Ga0308410_1103462	Not Available	793	Open in IMG/M
3300031966\|Ga0308420_1215396	Not Available	543	Open in IMG/M
3300031980\|Ga0308403_1017727	All Organisms → cellular organisms → Bacteria	1678	Open in IMG/M
3300031980\|Ga0308403_1037214	All Organisms → cellular organisms → Bacteria	1054	Open in IMG/M
3300031980\|Ga0308403_1074284	Not Available	676	Open in IMG/M
3300032034\|Ga0308407_1029034	All Organisms → cellular organisms → Bacteria	1380	Open in IMG/M
3300032034\|Ga0308407_1065465	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300032045\|Ga0308400_1107477	Not Available	563	Open in IMG/M
3300032056\|Ga0308310_1048372	All Organisms → cellular organisms → Bacteria	1207	Open in IMG/M
3300033886\|Ga0308413_062739	All Organisms → cellular organisms → Bacteria	1013	Open in IMG/M
3300033886\|Ga0308413_072821	All Organisms → cellular organisms → Bacteria	910	Open in IMG/M
3300033886\|Ga0308413_079534	All Organisms → cellular organisms → Bacteria	854	Open in IMG/M
3300033886\|Ga0308413_149696	All Organisms → cellular organisms → Bacteria	547	Open in IMG/M
3300034646\|Ga0372965_022523	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300034647\|Ga0372968_014247	All Organisms → cellular organisms → Bacteria	1205	Open in IMG/M
3300034647\|Ga0372968_016077	All Organisms → cellular organisms → Bacteria	1111	Open in IMG/M
3300034647\|Ga0372968_030219	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300034648\|Ga0372970_057050	Not Available	539	Open in IMG/M
3300034649\|Ga0372972_039572	All Organisms → cellular organisms → Bacteria	656	Open in IMG/M
3300034649\|Ga0372972_058713	Not Available	508	Open in IMG/M
3300034650\|Ga0372973_012031	All Organisms → cellular organisms → Bacteria	1644	Open in IMG/M
3300034650\|Ga0372973_023211	All Organisms → cellular organisms → Bacteria	1014	Open in IMG/M
3300034650\|Ga0372973_055578	Not Available	548	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Thermal Springs	Environmental → Aquatic → Thermal Springs	100.00%

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	99.07%
Alkaline	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline	0.93%

Habitat	Taxonomy	Distribution
Hot Spring Phototrophic Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat	75.00%
Anoxygenic And Chlorotrophic Microbial Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat	17.59%
Anoxygenic And Chlorotrophic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic	6.48%
Terrestrial Hot Spring Microbial Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002510	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012	Environmental	Open in IMG/M
3300003688	Coassembly of YNP Bryant MS undermat 2012 and YNP Bryant MS upper layer 2012	Environmental	Open in IMG/M
3300005251	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005452	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG	Environmental	Open in IMG/M
3300005453	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG	Environmental	Open in IMG/M
3300005495	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1400(2)_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006380	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010023	Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly	Environmental	Open in IMG/M
3300010186	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_2300_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010194	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0900_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010195	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010196	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010254	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1400(2)_B MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010272	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1700_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300026237	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)	Environmental	Open in IMG/M
3300026280	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)	Environmental	Open in IMG/M
3300027279	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG (SPAdes)	Environmental	Open in IMG/M
3300031245	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4	Environmental	Open in IMG/M
3300031508	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2	Environmental	Open in IMG/M
3300031509	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60	Environmental	Open in IMG/M
3300031512	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8	Environmental	Open in IMG/M
3300031513	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer	Environmental	Open in IMG/M
3300031514	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149	Environmental	Open in IMG/M
3300031515	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2	Environmental	Open in IMG/M
3300031516	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T9	Environmental	Open in IMG/M
3300031517	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20050624_m2	Environmental	Open in IMG/M
3300031568	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2	Environmental	Open in IMG/M
3300031767	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1	Environmental	Open in IMG/M
3300031783	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd	Environmental	Open in IMG/M
3300031812	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer	Environmental	Open in IMG/M
3300031830	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4	Environmental	Open in IMG/M
3300031875	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MS13	Environmental	Open in IMG/M
3300031878	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4	Environmental	Open in IMG/M
3300031948	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe1	Environmental	Open in IMG/M
3300031950	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65	Environmental	Open in IMG/M
3300031958	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore	Environmental	Open in IMG/M
3300031966	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55	Environmental	Open in IMG/M
3300031980	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3	Environmental	Open in IMG/M
3300032034	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2	Environmental	Open in IMG/M
3300032045	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65	Environmental	Open in IMG/M
3300032056	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS65	Environmental	Open in IMG/M
3300033886	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd	Environmental	Open in IMG/M
3300034646	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0000_MSt4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034647	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0600_MSt7 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034648	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1000_MSt9 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034649	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1400_MSt11 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034650	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1600_MSt12 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24186J35511_10332431	3300002510	Anoxygenic And Chlorotrophic Microbial Mat	VYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSAGGSDSWA*
Ga0061020_10807291	3300003688	Anoxygenic And Chlorotrophic Microbial Mat	IVELLRVRDDAPPIVLRSAYVSANRQWEHHSEFTLRVVEAALQLVHEYRAXPSAGGSDSWA*
Ga0068634_11748131	3300005251	Anoxygenic And Chlorotrophic Microbial Mat	VELLRVRDDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRADPSLGGSDSWA
Ga0068706_10713011	3300005452	Anoxygenic And Chlorotrophic	VREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAWA*
Ga0068706_10749912	3300005452	Anoxygenic And Chlorotrophic	IVELLRVRDDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRSDPSLGGAEAWA*
Ga0068706_10766881	3300005452	Anoxygenic And Chlorotrophic	PPLVLRSVYVQANRQWEYHSEFALRVVDAALQLVEEYRADPSMGGAEGG*
Ga0068705_100556482	3300005453	Anoxygenic And Chlorotrophic	ANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA*
Ga0068705_100949592	3300005453	Anoxygenic And Chlorotrophic	PPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSAGGSDSWA*
Ga0068666_10098352	3300005495	Anoxygenic And Chlorotrophic Microbial Mat	RQWERHSEFTLRVVEAALQLVHEYRADPSLGGSDSWA*
Ga0068664_10117312	3300006380	Anoxygenic And Chlorotrophic Microbial Mat	APPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSLGGSDSWA*
Ga0068664_10581672	3300006380	Anoxygenic And Chlorotrophic Microbial Mat	AIVELLRVRDDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRADPSLGGSDSWA*
Ga0068664_13538311	3300006380	Anoxygenic And Chlorotrophic Microbial Mat	NRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA*
Ga0068664_13632611	3300006380	Anoxygenic And Chlorotrophic Microbial Mat	QWEYHSEFALRVVEAALQLVHEYRADPSLGGAEGV*
Ga0130028_1009001	3300010023	Terrestrial Hot Spring Microbial Mat	VYVQANRQWEYHSEFVLRVVEAALQLVYEYRADPSLGGSDSWA*
Ga0124916_11507112	3300010186	Anoxygenic And Chlorotrophic Microbial Mat	VIELVRVWEDGPPIALRSVYTQSNRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0124921_12167032	3300010194	Anoxygenic And Chlorotrophic Microbial Mat	APPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA*
Ga0124911_10604391	3300010195	Anoxygenic And Chlorotrophic Microbial Mat	LRSAYVQANRQWERHSEFTLRVVEEALRLVEWYRADPSLGGAEGV*
Ga0124923_10746042	3300010196	Anoxygenic And Chlorotrophic Microbial Mat	APPVVLRSAYVQANRQWERHSEFTLRVVEEALRLVEWYRADPSLGGAEGV*
Ga0124938_10868561	3300010254	Anoxygenic And Chlorotrophic Microbial Mat	IYVQANRQWEYHSESALRVVEAALQLVHEYRADPSLGGAEAVWA*
Ga0124912_12695832	3300010272	Anoxygenic And Chlorotrophic Microbial Mat	VHGSQSGARRRAAIREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA*
Ga0209750_10307582	3300026237	Anoxygenic And Chlorotrophic Microbial Mat	APPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSAGGSDSWA
Ga0209750_10684061	3300026237	Anoxygenic And Chlorotrophic Microbial Mat	APPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0209017_100352371	3300026280	Anoxygenic And Chlorotrophic Microbial Mat	YVQANRQWEYHSEFALRVVEAALQLVHEYRADPSAGGSDSWA
Ga0209017_100756762	3300026280	Anoxygenic And Chlorotrophic Microbial Mat	YVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0209017_100918181	3300026280	Anoxygenic And Chlorotrophic Microbial Mat	DDAPPIVLRSAYVSANRQWEHHSEFTLRVVEAALQLVHEYRADPSAGGSDSWA
Ga0209691_10358462	3300027279	Anoxygenic And Chlorotrophic	RQWEYHSEFVLRVVEAALQLVQEYRSDPSLGGAEAWA
Ga0209691_10653491	3300027279	Anoxygenic And Chlorotrophic	DAPPIVLRSAYVQANRQWERHSEFALRIVEAALQLVHEYRVDPSMGGSDSWV
Ga0308395_11016722	3300031245	Hot Spring Phototrophic Mat	AIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVQEYRTDPSPGGAEAWA
Ga0308395_11201332	3300031245	Hot Spring Phototrophic Mat	QANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0308394_10434393	3300031508	Hot Spring Phototrophic Mat	YVQANRQWERHSEFTLRVVEEALRLVEWYRADPSLGGAEGV
Ga0308399_10168681	3300031509	Hot Spring Phototrophic Mat	LVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308399_10588852	3300031509	Hot Spring Phototrophic Mat	NRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
Ga0308399_10894102	3300031509	Hot Spring Phototrophic Mat	LRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308399_11117422	3300031509	Hot Spring Phototrophic Mat	VLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
Ga0308397_10530351	3300031512	Hot Spring Phototrophic Mat	DAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308412_10423091	3300031513	Hot Spring Phototrophic Mat	ELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVYEYRADPSMGGAEGF
Ga0308412_10611223	3300031513	Hot Spring Phototrophic Mat	AIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVEEYRADPSMGGTEG
Ga0308412_11345812	3300031513	Hot Spring Phototrophic Mat	ELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRAGPSMGGAEGV
Ga0308412_11388612	3300031513	Hot Spring Phototrophic Mat	LRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0308412_11595781	3300031513	Hot Spring Phototrophic Mat	AIVELLRVREHAPPLVLRSVYVQANRQWEYHSEYALRIVEAALQLVEEYRADPSMGGAEG
Ga0308412_11612762	3300031513	Hot Spring Phototrophic Mat	YAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLAGAEGV
Ga0308412_11903851	3300031513	Hot Spring Phototrophic Mat	ELLRVREDAPPLVLRSVYIQANRQWEYHSEFALRVIDAALHLVHEYRADSSLGGAEAVWA
Ga0308390_10272161	3300031514	Hot Spring Phototrophic Mat	PIVLRSAYVQANRQWERHSEFALRIVEAALQLVHEYRVDPSMGGSDSWV
Ga0308390_10407152	3300031514	Hot Spring Phototrophic Mat	LRVREDAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSLGGSDSWA
Ga0308390_11124732	3300031514	Hot Spring Phototrophic Mat	VYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
Ga0308396_10425021	3300031515	Hot Spring Phototrophic Mat	VLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGADSWA
Ga0308398_11256221	3300031516	Hot Spring Phototrophic Mat	SVYVQANRQWEYHSEFALRVVDAALQLVEEYRADPSMGGAEGV
Ga0308392_10138501	3300031517	Hot Spring Phototrophic Mat	ANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308392_10188121	3300031517	Hot Spring Phototrophic Mat	YAIVELLRIRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308393_10241713	3300031568	Hot Spring Phototrophic Mat	YVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
Ga0308393_10603521	3300031568	Hot Spring Phototrophic Mat	DAPPLVLRSVYVQANRQWEYHSEFVLRVVEAALQLLHEYRADPSMGGAEAV
Ga0308401_10854131	3300031767	Hot Spring Phototrophic Mat	YVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308418_100656311	3300031783	Hot Spring Phototrophic Mat	LRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308418_11138921	3300031783	Hot Spring Phototrophic Mat	YVQANRQWEYHSEFALRVVEAALQLVQEYRADPSPGGSDSWV
Ga0308418_11330011	3300031783	Hot Spring Phototrophic Mat	RQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0308411_100753883	3300031812	Hot Spring Phototrophic Mat	APPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRADPSLGGAEGV
Ga0308411_101048471	3300031812	Hot Spring Phototrophic Mat	HAPPLVLRSVYVQANRQWEYHSEYALRIVEAALQLVEEYRADPSLGGAEGV
Ga0308411_101117681	3300031812	Hot Spring Phototrophic Mat	HAPPLVLRSVYVQANRQWEYHSEYALRIVEAALQLVEEYRADPSMGGAEGV
Ga0308409_10830661	3300031830	Hot Spring Phototrophic Mat	DAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADLSMGGAEGV
Ga0308405_10531513	3300031875	Hot Spring Phototrophic Mat	EDGPPIALRSVYTQSNRQWEYHSEFALRVVEAALQLVHEYRADPSFSGAEGV
Ga0308405_10930401	3300031875	Hot Spring Phototrophic Mat	EDGPPIALRSVYTQSNRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0308405_11322121	3300031875	Hot Spring Phototrophic Mat	DAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEGV
Ga0308405_11472641	3300031875	Hot Spring Phototrophic Mat	IVELLRVRDDAPPIVLRSAYVQANRQWERHSEFTLRVVEAALQLVHEYRADPSMGGAEGV
Ga0308405_11563922	3300031875	Hot Spring Phototrophic Mat	AYVQANRQWERHSEFALRIVEAALQLVHEYRVDPSMGGSDSWV
Ga0308404_10234183	3300031878	Hot Spring Phototrophic Mat	SVYVQANRQWEYHSEFALRVVEAALQLVYEYRADPSLGGAEAVWA
Ga0308404_10311643	3300031878	Hot Spring Phototrophic Mat	AIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLSGAEG
Ga0308404_10664472	3300031878	Hot Spring Phototrophic Mat	LLRVRDDAPPVVLRSAYVQANRQWERHSEFTLRVVEEALRLVEWYRADPSMGGTEGV
Ga0308406_10370231	3300031948	Hot Spring Phototrophic Mat	YAIVELLRIRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
Ga0308406_10676092	3300031948	Hot Spring Phototrophic Mat	DAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSAGGSDSWA
Ga0308406_10809661	3300031948	Hot Spring Phototrophic Mat	DAPPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSLGGAEAWA
Ga0308406_10986951	3300031948	Hot Spring Phototrophic Mat	RSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0308417_10411561	3300031950	Hot Spring Phototrophic Mat	VLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGTEAV
Ga0308417_10447011	3300031950	Hot Spring Phototrophic Mat	LLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVYEYRADPSLSGAEGV
Ga0308417_10578621	3300031950	Hot Spring Phototrophic Mat	VELLRVREHAPPLVLRSVYVQANRQWEYHSEYALRIVEAALQLVEEYRADPSMGGAEGV
Ga0308417_10621071	3300031950	Hot Spring Phototrophic Mat	YVQANRQWEYHSEFVLRVVEAALQLVHEYRADLSMGGAEGV
Ga0308417_10803371	3300031950	Hot Spring Phototrophic Mat	APPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSAGGSDSWV
Ga0308417_11000641	3300031950	Hot Spring Phototrophic Mat	YAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0308417_11017023	3300031950	Hot Spring Phototrophic Mat	LLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAV
Ga0308417_11019631	3300031950	Hot Spring Phototrophic Mat	PPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRADPSLGGSDSWA
Ga0308417_11293121	3300031950	Hot Spring Phototrophic Mat	YVSANRQWERHSEFTLRVVEAALQLVHEYRADPSAGGSDSWA
Ga0308417_11319401	3300031950	Hot Spring Phototrophic Mat	PPLVLRSVYVQANRQWEYHSEYALRIVEAALQLVEEYRADPSLAGTEGV
Ga0308417_11321011	3300031950	Hot Spring Phototrophic Mat	PPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVQEYRADPSMGGSDSWA
Ga0308417_11478031	3300031950	Hot Spring Phototrophic Mat	AIVELLRVRDDAPPVVLRSAYVQANRQWERHSEFTLRVVEEALRLVEWYRADPSLGGAEG
Ga0308417_11520753	3300031950	Hot Spring Phototrophic Mat	DAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRAGPSMGGAEGV
Ga0308417_11969131	3300031950	Hot Spring Phototrophic Mat	RVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAV
Ga0308410_11034621	3300031958	Hot Spring Phototrophic Mat	AVVELLRVREDAPPLVLRSVYIQANRQWEYHSEFALRVIDAALHLVHEYRADPSLGGAEAVWA
Ga0308420_12153962	3300031966	Hot Spring Phototrophic Mat	YAIVELLRVRDDAPPVVLRSAYVQANRQWERHSEFTLRVVEEALRLVEWYRADPSLGGAEGV
Ga0308403_10177273	3300031980	Hot Spring Phototrophic Mat	YAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEMALQLVHEYRADPSMGGAEGV
Ga0308403_10372142	3300031980	Hot Spring Phototrophic Mat	QWERHSEFALRIVEAALQLVQEYRADPTLGGAEAWA
Ga0308403_10742842	3300031980	Hot Spring Phototrophic Mat	LVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
Ga0308407_10290343	3300032034	Hot Spring Phototrophic Mat	YPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308407_10654651	3300032034	Hot Spring Phototrophic Mat	ALRSVYTQSNRQWEYHSEFALRVVEAALQLVHEYRADPSMGGSDSWA
Ga0308400_11074771	3300032045	Hot Spring Phototrophic Mat	IRDDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308310_10483722	3300032056	Hot Spring Phototrophic Mat	VYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0308413_062739_875_1012	3300033886	Hot Spring Phototrophic Mat	LRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSMGGAEGV
Ga0308413_072821_751_879	3300033886	Hot Spring Phototrophic Mat	VYVQANRQWEYHSEFALRVVEAALRLVQEYRADPSMGGAEAV
Ga0308413_079534_7_135	3300033886	Hot Spring Phototrophic Mat	VYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEEG
Ga0308413_149696_409_546	3300033886	Hot Spring Phototrophic Mat	RSAYVSANRQWERHSEFTLRVVEAALQLVQEYRADPSLGGSDSWV
Ga0372965_022523_26_154	3300034646	Hot Spring Phototrophic Mat	VYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0372968_014247_1052_1204	3300034647	Hot Spring Phototrophic Mat	PPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSAGGSDSWA
Ga0372968_016077_961_1110	3300034647	Hot Spring Phototrophic Mat	PPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0372968_030219_2_145	3300034647	Hot Spring Phototrophic Mat	VLRSAYVQANRQWERHSEFTLRVVEAALQLVHEYRADPSLGGSDSWA
Ga0372970_057050_367_531	3300034648	Hot Spring Phototrophic Mat	VREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV
Ga0372972_039572_503_655	3300034649	Hot Spring Phototrophic Mat	PPIVLRSAYVSANRQWERHSEFTLRVVEAALQLVHEYRADPSAGGSDSWA
Ga0372972_058713_2_148	3300034649	Hot Spring Phototrophic Mat	PIVLRSTYVSANRQWERHSEFTLRVVEAALQLVQEYRADPSLGGAEGV
Ga0372973_012031_3_119	3300034650	Hot Spring Phototrophic Mat	NRQWERHSEFTLRVVEAALQLVQEYRSDPSLGGAEAWA
Ga0372973_023211_823_1014	3300034650	Hot Spring Phototrophic Mat	AIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVWA
Ga0372973_055578_426_548	3300034650	Hot Spring Phototrophic Mat	VQANRQWEYHSEFALRVVEAALQLVHEYRADPSMGGAEGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F090437

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences