Scaffold Ga0308412_1003339

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1003339
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8557
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (88.89%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (88.89%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F004024	Metagenome / Metatranscriptome	456	N
F008135	Metagenome / Metatranscriptome	338	Y
F015735	Metagenome / Metatranscriptome	252	Y
F092113	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_100333913	F015735	AGGCGG	VIVYHHWSVEWHPRNVDPPGDLPRVVCVARRAVSDPFSGPGPFPPDVDRSVRYWNLVASGGARDHGAGYEVAWRVLVVADDADGDAPDGAWSDDPVYRARRRLLRRIMRSQCPIPVLADHFADEHFRDHPEYFGLLEPGA
Ga0308412_100333914	F002372	AGGAG	MPTRKEDALWSVVHQRSAHLRALLDSLDMVDIAVTYELDYYPYAVVELLRVREDAPPLVLRSVYIQSNRQWEYHSEYTLRVVEAALRLVEEYRADPSMGGAEAVWA
Ga0308412_100333915	F002795	GGAGG	MPVTSGLVLRGMIAAYREFVSRKDGKVYRIVTVYGDLVAGEDVLCAVDGYDVFVDSPDYSRGEMVAFPARLQFARDGSGKPIVRLYVDEGVR
Ga0308412_100333916	F008135	AGGAGG	MRAMIDPRTERVLTEAGASIARVLDARQRHAVALALEVCSYIVAALPPDNDVTFGDMVRLLRWFGEGFNKDAEGDDAGN
Ga0308412_100333917	F002229	GGAGG	MVTLLTLDGVEEIDYTPSDAEIRASLDDPGLYGMVLGVVTWIRLSSGVGWWTVLFGKRLTVTLAPVGWCWVMDGLGERGYWSPALSAVIADVCAMYGGRVED
Ga0308412_100333918	F092113	N/A	GADYAVYRWHEHPYADDALVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPAPALAPARRRG
Ga0308412_10033392	F004024	AGGA	MPSERDYLRQPLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPIIEASAIRQSPGASRTLRDALRALSLEEYVRRRDERRSDR
Ga0308412_10033394	F001381	GAG	MQYVIATLYVLVWLALAALAALWLPIWALPVALVQLAVAYVMLRAVWLTVARGDD
Ga0308412_10033395	F000855	GAGG	MDWLEDFFSKIVSWLDQISAGVHNAIIGWINDSLIATWNGWMDSLLHPAQAMPSVPALRWVVDWLGGIVDYTRLMYMLVDYVAYAQIVQQALTAQIGIVIVGLGFRAWLVIRRIVLVS