Metagenome / Metatranscriptome Family F092113

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F092113
Family Type	Metagenome / Metatranscriptome
Number of Sequences	107
Average Sequence Length	67 residues
Representative Sequence	GVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Number of Associated Samples	46
Number of Associated Scaffolds	107

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	96.26 %
% of genes from short scaffolds (< 2000 bps)	92.52 %
Associated GOLD sequencing projects	42
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (93.458 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat (80.374 % of family members)
Environment Ontology (ENVO)	Unclassified (98.131 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (80.374 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.96% β-sheet: 38.81% Coil/Unstructured: 52.24%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 107 Family Scaffolds
PF00145	DNA_methylase	5.61
PF01507	PAPS_reduct	0.93

COG ID	Name	Functional Category	% Frequency in 107 Family Scaffolds
COG0270	DNA-cytosine methylase	Replication, recombination and repair [L]	5.61

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.46 %
All Organisms	root	All Organisms	6.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.46 %
cellular organisms	root	All Organisms → cellular organisms	6.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	93.46 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	6.54 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002493\|JGI24185J35167_1071584	Not Available	633	Open in IMG/M
3300002493\|JGI24185J35167_1084637	Not Available	552	Open in IMG/M
3300002510\|JGI24186J35511_1033725	Not Available	791	Open in IMG/M
3300003688\|Ga0061020_1107737	Not Available	550	Open in IMG/M
3300003688\|Ga0061020_1108414	Not Available	547	Open in IMG/M
3300005250\|Ga0068635_1173472	Not Available	623	Open in IMG/M
3300005452\|Ga0068706_1049661	Not Available	775	Open in IMG/M
3300005452\|Ga0068706_1052856	Not Available	742	Open in IMG/M
3300005452\|Ga0068706_1061092	Not Available	674	Open in IMG/M
3300005452\|Ga0068706_1067404	Not Available	634	Open in IMG/M
3300005453\|Ga0068705_10148982	Not Available	582	Open in IMG/M
3300005497\|Ga0068648_1109525	Not Available	551	Open in IMG/M
3300006380\|Ga0068664_1361751	Not Available	2367	Open in IMG/M
3300010023\|Ga0130028_100542	Not Available	2003	Open in IMG/M
3300010182\|Ga0124917_1056336	Not Available	760	Open in IMG/M
3300010195\|Ga0124911_1090383	Not Available	519	Open in IMG/M
3300010257\|Ga0124913_1185380	Not Available	744	Open in IMG/M
3300026237\|Ga0209750_1034546	Not Available	985	Open in IMG/M
3300026237\|Ga0209750_1039898	Not Available	895	Open in IMG/M
3300026237\|Ga0209750_1060141	Not Available	681	Open in IMG/M
3300026280\|Ga0209017_10100656	Not Available	542	Open in IMG/M
3300031245\|Ga0308395_1060111	Not Available	959	Open in IMG/M
3300031245\|Ga0308395_1089455	Not Available	719	Open in IMG/M
3300031245\|Ga0308395_1139370	Not Available	527	Open in IMG/M
3300031508\|Ga0308394_1039792	Not Available	1167	Open in IMG/M
3300031509\|Ga0308399_1069700	Not Available	736	Open in IMG/M
3300031512\|Ga0308397_1042574	Not Available	1148	Open in IMG/M
3300031512\|Ga0308397_1043932	Not Available	1122	Open in IMG/M
3300031512\|Ga0308397_1059834	Not Available	898	Open in IMG/M
3300031512\|Ga0308397_1081814	Not Available	718	Open in IMG/M
3300031513\|Ga0308412_1003339	Not Available	8557	Open in IMG/M
3300031513\|Ga0308412_1064093	Not Available	1206	Open in IMG/M
3300031513\|Ga0308412_1116149	Not Available	784	Open in IMG/M
3300031514\|Ga0308390_1013146	All Organisms → cellular organisms → Bacteria	3140	Open in IMG/M
3300031514\|Ga0308390_1049254	Not Available	1089	Open in IMG/M
3300031515\|Ga0308396_1014193	Not Available	2350	Open in IMG/M
3300031515\|Ga0308396_1038146	Not Available	1134	Open in IMG/M
3300031515\|Ga0308396_1086244	Not Available	644	Open in IMG/M
3300031515\|Ga0308396_1103197	Not Available	570	Open in IMG/M
3300031516\|Ga0308398_1079728	Not Available	744	Open in IMG/M
3300031516\|Ga0308398_1089937	Not Available	682	Open in IMG/M
3300031518\|Ga0308389_1033570	Not Available	1593	Open in IMG/M
3300031518\|Ga0308389_1041956	Not Available	1319	Open in IMG/M
3300031518\|Ga0308389_1063241	Not Available	943	Open in IMG/M
3300031518\|Ga0308389_1070279	Not Available	866	Open in IMG/M
3300031518\|Ga0308389_1123501	Not Available	558	Open in IMG/M
3300031518\|Ga0308389_1141246	Not Available	503	Open in IMG/M
3300031568\|Ga0308393_1021221	All Organisms → cellular organisms → Bacteria	1753	Open in IMG/M
3300031568\|Ga0308393_1036678	Not Available	1204	Open in IMG/M
3300031568\|Ga0308393_1115823	Not Available	562	Open in IMG/M
3300031767\|Ga0308401_1116779	Not Available	505	Open in IMG/M
3300031776\|Ga0308415_1025356	All Organisms → cellular organisms → Bacteria	1652	Open in IMG/M
3300031776\|Ga0308415_1091123	Not Available	629	Open in IMG/M
3300031783\|Ga0308418_1035381	Not Available	1320	Open in IMG/M
3300031783\|Ga0308418_1087702	Not Available	693	Open in IMG/M
3300031783\|Ga0308418_1126181	Not Available	544	Open in IMG/M
3300031783\|Ga0308418_1134188	Not Available	522	Open in IMG/M
3300031812\|Ga0308411_10119813	Not Available	975	Open in IMG/M
3300031812\|Ga0308411_10148034	Not Available	835	Open in IMG/M
3300031812\|Ga0308411_10243888	Not Available	591	Open in IMG/M
3300031830\|Ga0308409_1054938	Not Available	976	Open in IMG/M
3300031830\|Ga0308409_1071515	Not Available	815	Open in IMG/M
3300031830\|Ga0308409_1085568	Not Available	717	Open in IMG/M
3300031830\|Ga0308409_1092705	Not Available	679	Open in IMG/M
3300031865\|Ga0308408_1013810	All Organisms → cellular organisms → Bacteria	2411	Open in IMG/M
3300031865\|Ga0308408_1024180	Not Available	1660	Open in IMG/M
3300031865\|Ga0308408_1054475	Not Available	967	Open in IMG/M
3300031865\|Ga0308408_1139567	Not Available	517	Open in IMG/M
3300031875\|Ga0308405_1129302	Not Available	591	Open in IMG/M
3300031875\|Ga0308405_1158147	Not Available	515	Open in IMG/M
3300031878\|Ga0308404_1029693	Not Available	1169	Open in IMG/M
3300031948\|Ga0308406_1095705	Not Available	608	Open in IMG/M
3300031950\|Ga0308417_1059104	Not Available	1531	Open in IMG/M
3300031950\|Ga0308417_1068601	Not Available	1369	Open in IMG/M
3300031950\|Ga0308417_1103771	Not Available	1006	Open in IMG/M
3300031950\|Ga0308417_1139289	Not Available	810	Open in IMG/M
3300031950\|Ga0308417_1144235	Not Available	790	Open in IMG/M
3300031950\|Ga0308417_1152918	Not Available	757	Open in IMG/M
3300031950\|Ga0308417_1159843	Not Available	733	Open in IMG/M
3300031950\|Ga0308417_1253533	Not Available	529	Open in IMG/M
3300031950\|Ga0308417_1260639	Not Available	519	Open in IMG/M
3300031950\|Ga0308417_1268103	Not Available	509	Open in IMG/M
3300031958\|Ga0308410_1004375	All Organisms → cellular organisms → Bacteria	7682	Open in IMG/M
3300031958\|Ga0308410_1027417	All Organisms → cellular organisms → Bacteria	2167	Open in IMG/M
3300031958\|Ga0308410_1037734	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
3300031958\|Ga0308410_1061362	Not Available	1168	Open in IMG/M
3300031958\|Ga0308410_1190423	Not Available	520	Open in IMG/M
3300031966\|Ga0308420_1056408	Not Available	1405	Open in IMG/M
3300031966\|Ga0308420_1103010	Not Available	914	Open in IMG/M
3300031966\|Ga0308420_1201458	Not Available	569	Open in IMG/M
3300031980\|Ga0308403_1082961	Not Available	632	Open in IMG/M
3300031980\|Ga0308403_1105031	Not Available	546	Open in IMG/M
3300032034\|Ga0308407_1030697	Not Available	1330	Open in IMG/M
3300032034\|Ga0308407_1046780	Not Available	996	Open in IMG/M
3300032045\|Ga0308400_1073660	Not Available	721	Open in IMG/M
3300032049\|Ga0308416_1026127	Not Available	1366	Open in IMG/M
3300032057\|Ga0308421_1119892	Not Available	615	Open in IMG/M
3300032057\|Ga0308421_1141741	Not Available	544	Open in IMG/M
3300032058\|Ga0308419_1038397	Not Available	1816	Open in IMG/M
3300033886\|Ga0308413_042088	Not Available	1358	Open in IMG/M
3300033886\|Ga0308413_050868	Not Available	1183	Open in IMG/M
3300033886\|Ga0308413_061929	Not Available	1023	Open in IMG/M
3300033886\|Ga0308413_070641	Not Available	930	Open in IMG/M
3300034646\|Ga0372965_016835	Not Available	1145	Open in IMG/M
3300034646\|Ga0372965_037292	Not Available	662	Open in IMG/M
3300034648\|Ga0372970_034617	Not Available	757	Open in IMG/M
3300034649\|Ga0372972_054547	Not Available	532	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Thermal Springs	Environmental → Aquatic → Thermal Springs	100.00%

Habitat	Taxonomy	Distribution
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	100.00%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified	99.07%
Alkaline	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline	0.93%

Habitat	Taxonomy	Distribution
Hot Spring Phototrophic Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat	80.37%
Anoxygenic And Chlorotrophic Microbial Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic Microbial Mat	14.02%
Anoxygenic And Chlorotrophic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Anoxygenic And Chlorotrophic	4.67%
Terrestrial Hot Spring Microbial Mat	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Alkaline → Terrestrial Hot Spring Microbial Mat	0.93%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002493	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012	Environmental	Open in IMG/M
3300002510	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012	Environmental	Open in IMG/M
3300003688	Coassembly of YNP Bryant MS undermat 2012 and YNP Bryant MS upper layer 2012	Environmental	Open in IMG/M
3300005250	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005452	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-B MetaG	Environmental	Open in IMG/M
3300005453	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS-T MetaG	Environmental	Open in IMG/M
3300005497	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500(2)_T MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300006380	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1200_B MetaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010023	Terrestrial hot spring microbial mat viral communities from Octopus Spring, Yellowstone National Park, Wyoming (2009) spADES assembly	Environmental	Open in IMG/M
3300010182	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_0300_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010195	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1500_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300010257	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP MS_1800_T MetaT (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300026237	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS upper layer 2012 (SPAdes)	Environmental	Open in IMG/M
3300026280	Anoxygenic and chlorotrophic microbial mat microbial communities from Yellowstone National Park, USA - YNP Bryant MS undermat 2012 (SPAdes)	Environmental	Open in IMG/M
3300031245	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_P4	Environmental	Open in IMG/M
3300031508	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_me2	Environmental	Open in IMG/M
3300031509	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60	Environmental	Open in IMG/M
3300031512	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8	Environmental	Open in IMG/M
3300031513	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer	Environmental	Open in IMG/M
3300031514	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_149	Environmental	Open in IMG/M
3300031515	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050930_Pe2	Environmental	Open in IMG/M
3300031516	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T9	Environmental	Open in IMG/M
3300031518	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20040719_148	Environmental	Open in IMG/M
3300031568	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050630_ee2	Environmental	Open in IMG/M
3300031767	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060913_OS-M1	Environmental	Open in IMG/M
3300031776	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS55	Environmental	Open in IMG/M
3300031783	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090729_R4cd	Environmental	Open in IMG/M
3300031812	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-BottomLayer	Environmental	Open in IMG/M
3300031830	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe4	Environmental	Open in IMG/M
3300031865	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MSe3	Environmental	Open in IMG/M
3300031875	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060912_MS13	Environmental	Open in IMG/M
3300031878	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M4	Environmental	Open in IMG/M
3300031948	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe1	Environmental	Open in IMG/M
3300031950	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS65	Environmental	Open in IMG/M
3300031958	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST2-MatCore	Environmental	Open in IMG/M
3300031966	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS55	Environmental	Open in IMG/M
3300031980	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS-M3	Environmental	Open in IMG/M
3300032034	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20060911_MSe2	Environmental	Open in IMG/M
3300032045	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-65	Environmental	Open in IMG/M
3300032049	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090730_OS60	Environmental	Open in IMG/M
3300032057	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS60	Environmental	Open in IMG/M
3300032058	Hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20090730_MS50	Environmental	Open in IMG/M
3300033886	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20090729_t10cd	Environmental	Open in IMG/M
3300034646	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_0000_MSt4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034648	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1000_MSt9 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034649	Metatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1400_MSt11 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24185J35167_10715841	3300002493	Anoxygenic And Chlorotrophic Microbial Mat	LTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAHGDTLTILPSPAPALAPARRRG*
JGI24185J35167_10846371	3300002493	Anoxygenic And Chlorotrophic Microbial Mat	LTQYVYVTAGRFRRAGVDYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPAPAPALARRRG*
JGI24186J35511_10337253	3300002510	Anoxygenic And Chlorotrophic Microbial Mat	VYVTAGRFRRSGADYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPAPALARRRG*
Ga0061020_11077371	3300003688	Anoxygenic And Chlorotrophic Microbial Mat	YRRNGADYAVYRWHEHPYADDVLVERYRFALRLDTWYGXXDTLYGAAXGDTLAILPASAPAPALAPARRRG*
Ga0061020_11084141	3300003688	Anoxygenic And Chlorotrophic Microbial Mat	RYRRNGADYAVYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGAAVGDTLAILPASAPAPALAPARRRG*
Ga0068635_11734722	3300005250	Anoxygenic And Chlorotrophic Microbial Mat	RLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDALVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPAPALARRRG*
Ga0068706_10496611	3300005452	Anoxygenic And Chlorotrophic	VYRWHEHPYADDVLVERYRFGLRLDTWYGVYDTLYGASAGDTLAILPSPAPALAPARRRA
Ga0068706_10528561	3300005452	Anoxygenic And Chlorotrophic	YRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPAPALARRRG*
Ga0068706_10610921	3300005452	Anoxygenic And Chlorotrophic	SGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAHGDTLTILPSPAPALAPARRRG*
Ga0068706_10674042	3300005452	Anoxygenic And Chlorotrophic	YRWHEHPYADDVLVERYRFALRLDSWYGVYDTLYGAAPGDTLAILPASAPAPALAPARRRG*
Ga0068705_101489822	3300005453	Anoxygenic And Chlorotrophic	AVYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGAAVGDTLAILPASAPAPALAPARRRG*
Ga0068648_11095251	3300005497	Anoxygenic And Chlorotrophic Microbial Mat	YAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPALAPARRRG*
Ga0068664_13617511	3300006380	Anoxygenic And Chlorotrophic Microbial Mat	WHEHPYADDVLVERYRFALRLDSWYGVYDTLYGAAAGDTLAILPAPAPAPALAPARRRG*
Ga0130028_1005421	3300010023	Terrestrial Hot Spring Microbial Mat	TAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGASPGDTLAILPAPAPALAPARRRG*
Ga0124917_10563361	3300010182	Anoxygenic And Chlorotrophic Microbial Mat	VTAGRFRRSGADYAVYRWHEHPYADDALVERYRSALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPALAPARRRG*
Ga0124911_10903832	3300010195	Anoxygenic And Chlorotrophic Microbial Mat	RWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0124913_11853803	3300010257	Anoxygenic And Chlorotrophic Microbial Mat	DYAVYRWHEHPYADDVLVERYRFGLRLDTWYGVYDTLYGASAGDTLAILPAPAPVPAPARRRA*
Ga0209750_10345461	3300026237	Anoxygenic And Chlorotrophic Microbial Mat	LRRLTQYVYVTAGRFRRSGADYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPAPALARRRG
Ga0209750_10398981	3300026237	Anoxygenic And Chlorotrophic Microbial Mat	RLTQYVYVTAGRFRRSGADYAVYRWHEHPYADDALVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPALAPARRRG
Ga0209750_10601412	3300026237	Anoxygenic And Chlorotrophic Microbial Mat	RRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGVYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0209017_101006561	3300026280	Anoxygenic And Chlorotrophic Microbial Mat	DVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFGLRLDTWYGVYDTLYGASAGDTLAILPSPAPALAPARRRA
Ga0308395_10601111	3300031245	Hot Spring Phototrophic Mat	YADDVLVERYRFALRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308395_10894553	3300031245	Hot Spring Phototrophic Mat	TAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308395_11393702	3300031245	Hot Spring Phototrophic Mat	HEHPYADDVLVERYRFGLRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308394_10397924	3300031508	Hot Spring Phototrophic Mat	EHPYADDVLVERYRFALRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPAPALARRRG
Ga0308399_10697003	3300031509	Hot Spring Phototrophic Mat	EHPYADDALVERYRFALRLSDWYGVYDTLYGAAPGDTLAILPSPALAPARRRA
Ga0308397_10425744	3300031512	Hot Spring Phototrophic Mat	DYAVYRWHEHPYADDVLVERYRFGLRLDTWYGVYDTLYGASAGDTLAILPSPAPALAPARRRA
Ga0308397_10439324	3300031512	Hot Spring Phototrophic Mat	EHPYADDVLVERYRFALRLSDWYGIYDTLYGASAGDTLAILPAPAPAPALAPARRRG
Ga0308397_10598343	3300031512	Hot Spring Phototrophic Mat	RLRRLTQYVYVTAGRFRRSGADYAVYRWHEHPYADDALVERYRFALRLSDWYGVYDTLYGAAAGDTLAILPAPAPAPAPARRRA
Ga0308397_10818142	3300031512	Hot Spring Phototrophic Mat	RLRRLTQYVYVTAGRYRRGGADYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPAPAPALARRRG
Ga0308412_100333918	3300031513	Hot Spring Phototrophic Mat	GADYAVYRWHEHPYADDALVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPAPALAPARRRG
Ga0308412_10640934	3300031513	Hot Spring Phototrophic Mat	RRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPVPAPALAPARRRG
Ga0308412_11161491	3300031513	Hot Spring Phototrophic Mat	RRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPAPALARRRG
Ga0308390_10131467	3300031514	Hot Spring Phototrophic Mat	AVYRWHEHPYADDVLVERYRFGLRLDAWYGVYDTLYGAAPGDTLAILPAPAPALAPVRRR
Ga0308390_10492541	3300031514	Hot Spring Phototrophic Mat	RRSGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAAGDTLAILPAPTPAPALAPARRRG
Ga0308396_10141937	3300031515	Hot Spring Phototrophic Mat	GRYRRSGADYAIYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGASPGDTLAILPAPAPAPALARRRG
Ga0308396_10381464	3300031515	Hot Spring Phototrophic Mat	HPYADDVLVERYRFALRLDTWYGVYDTLYGAAAGDTLAILPAPSPAPALAPARRRG
Ga0308396_10862442	3300031515	Hot Spring Phototrophic Mat	RLRRLTQYVYVTAGRYRRNGADYAVYRWHEHPYADDVLVERYRFGLRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308396_11031972	3300031515	Hot Spring Phototrophic Mat	HEHPYADDVLVERYRFALRLSDWYGVYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308398_10797283	3300031516	Hot Spring Phototrophic Mat	HPYADDVLVERYRFALRLSDWYGVYDTLYGASAGDTLAILPAPAPALARRRA
Ga0308398_10899373	3300031516	Hot Spring Phototrophic Mat	EHPYADDALVERYRFALRLSDWYGIYDTLYGASPGDTLAILPVPAPAPALAPARRRG
Ga0308389_10335705	3300031518	Hot Spring Phototrophic Mat	ADDVLVERYRFALRLSDWYGVYDTLYGAAAGDTLAILPAPAPAPAPALARRRG
Ga0308389_10419561	3300031518	Hot Spring Phototrophic Mat	HVYVTAGRYRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGAAPGDTLAILPSPAPAPALARRRG
Ga0308389_10632414	3300031518	Hot Spring Phototrophic Mat	AGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGVYDTLYGAAAGDTLAILPAPAPAPAPALARRRG
Ga0308389_10702793	3300031518	Hot Spring Phototrophic Mat	TQYVYVTAGRYRRNGADYAVYRWHEHPYADDVLVERYRFGLRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308389_11235011	3300031518	Hot Spring Phototrophic Mat	DYAVYRWHEHPYADDVLVERYRFGLRLDTWYGVYDTLYGASAGDTLAILPAPAPAPALARRRG
Ga0308389_11412461	3300031518	Hot Spring Phototrophic Mat	TAGRFRRSGADYAVYRWHEHPYADDVLVERYRFALRLDSWYGIYDTLYGAAPGDTLAILPAPAPAPALAPARRRG
Ga0308393_10212211	3300031568	Hot Spring Phototrophic Mat	RNGADYAVYRWHEHPYADDVLVERYRFGLRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308393_10366781	3300031568	Hot Spring Phototrophic Mat	ADDVLVERYRFGLRLDTWYGAYDTLYGASAGDTLAILPAPAPAPALARRRA
Ga0308393_11158232	3300031568	Hot Spring Phototrophic Mat	SGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAHGDTLTILPSPAPALAPARRRG
Ga0308401_11167791	3300031767	Hot Spring Phototrophic Mat	YVYVTAGRYRRSGADYAVYRWHEHPYADDVLVERYRFGLRLDAWYGVYDTLYGAAPGDTLAILPAPASAPAPALARRRD
Ga0308415_10253561	3300031776	Hot Spring Phototrophic Mat	DYAVYRWHEHPYADDVLVERYRFGLRLDTWYGVYDTLYGASAGDSLAILPSPSPAPAPVRRRA
Ga0308415_10911231	3300031776	Hot Spring Phototrophic Mat	AGRFRRAGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGVYDTLYGASAGDTLAILPAPSSPSLSLAAPVRRRG
Ga0308418_10353811	3300031783	Hot Spring Phototrophic Mat	LRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDAWYGIYDTLYGASPGDTLAILPAPAPAPALARRRG
Ga0308418_10877021	3300031783	Hot Spring Phototrophic Mat	VDYAVYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAPGDTLAILPAPAPAPALAPARRRG
Ga0308418_11261811	3300031783	Hot Spring Phototrophic Mat	RLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASAGDTLAILPAPAPAPSLAPARRRG
Ga0308418_11341882	3300031783	Hot Spring Phototrophic Mat	YVYVTAGRFRRSGADYAVYRWHEHPYADDVLVERYRFALRLDAWYGIYDTLYGASPGDTLAILPAPAPAPALAPARRRG
Ga0308411_101198134	3300031812	Hot Spring Phototrophic Mat	YADDVLVERYRFALRLDAWYGVYDTLYGASPGDTLAILPAPAPVPAPALARRRG
Ga0308411_101480343	3300031812	Hot Spring Phototrophic Mat	YADDVLVERYRFALRLDAWYGVYDTLYGASPGDTLAILPAPAPIPAPALARRRG
Ga0308411_102438881	3300031812	Hot Spring Phototrophic Mat	YVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGVYDTLYGASHGDTLAILPAPAPAPAPVRRRA
Ga0308409_10549384	3300031830	Hot Spring Phototrophic Mat	GVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308409_10715151	3300031830	Hot Spring Phototrophic Mat	VYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAHGDTLTILPSPAPAPAPARRRA
Ga0308409_10855681	3300031830	Hot Spring Phototrophic Mat	RLRRLTQYVYVTAGRYRRNGADYAVYRWHEHPYADDVLVERYWFGLRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308409_10927053	3300031830	Hot Spring Phototrophic Mat	GADYAVYRWHEHPYADDVLVERYRFALRLDSWYGVYDTLYGAAPGDTLAILPASAPAPALAPARRRG
Ga0308408_10138105	3300031865	Hot Spring Phototrophic Mat	YADDVLVERYRFALRLDTWYGVYDTLYGAAPGDTLAILPAPAPAPALAPARRRG
Ga0308408_10241806	3300031865	Hot Spring Phototrophic Mat	YVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDMWYGVYDTLYGAAHGDTLTILPSPAPALAPARRRG
Ga0308408_10544751	3300031865	Hot Spring Phototrophic Mat	YAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPAPAPALARRRG
Ga0308408_11395671	3300031865	Hot Spring Phototrophic Mat	YVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAHGDTLTILPSPAPALAPARRRG
Ga0308405_11293021	3300031875	Hot Spring Phototrophic Mat	GVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGVYDTLYGAAHGDTLTILPSPAPALAPARRRG
Ga0308405_11581472	3300031875	Hot Spring Phototrophic Mat	RYRRGGADHAVYRWHEHPYADDALVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPAPALAPVRRRA
Ga0308404_10296931	3300031878	Hot Spring Phototrophic Mat	TQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGASAGDTLAILPSPAPALAPARRRG
Ga0308406_10957052	3300031948	Hot Spring Phototrophic Mat	AGRYRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGVYDTLYGASAGDTLAILPAPAPALAPARRRA
Ga0308417_10591041	3300031950	Hot Spring Phototrophic Mat	EHPYADDVLVERYRFALRLDSWYGVYDTLYGAAAGDTLAILPAPAPAPALARRRG
Ga0308417_10686015	3300031950	Hot Spring Phototrophic Mat	ADDVLVERYRFALRLDAWYGVYDTLYGASPGDTLAILPAPAPIPAPALARRRG
Ga0308417_11037714	3300031950	Hot Spring Phototrophic Mat	RSGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGAAAGDTLAILPSPAPALAPARRRG
Ga0308417_11392893	3300031950	Hot Spring Phototrophic Mat	ADYAVYRWHEHPYADDVLVERYRFALRLDSWYGVYDTLYGAAAGDTLAILPAPAPAPALARRRG
Ga0308417_11442351	3300031950	Hot Spring Phototrophic Mat	RYRRSGADYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASAGDTLAILPAPAPALARRRA
Ga0308417_11529181	3300031950	Hot Spring Phototrophic Mat	YADDALVERYRFALRLDSWYGVYDTLYGASPGDTLAILPSPAPAIARRRG
Ga0308417_11598431	3300031950	Hot Spring Phototrophic Mat	YADDVLVERYRFALRLSDWYGVYDTLYGAAAGDTLAILPAPAPAIAPARRRA
Ga0308417_12535331	3300031950	Hot Spring Phototrophic Mat	DYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGASAGDTLAILPAPSSVPAPARRRG
Ga0308417_12606391	3300031950	Hot Spring Phototrophic Mat	DDVLVERYRFALRLSDWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308417_12681031	3300031950	Hot Spring Phototrophic Mat	ADYAVYRWHEHPYADDVLVERYRFALRLDSWYGVYDTLYGAAAGDTLAVLPAPAPAPALAPARRRG
Ga0308410_100437514	3300031958	Hot Spring Phototrophic Mat	RRSGADYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGASPGDTLAILPAPAPIPAPALARRRG
Ga0308410_10274171	3300031958	Hot Spring Phototrophic Mat	AGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308410_10377346	3300031958	Hot Spring Phototrophic Mat	WHEHPYADDVLVERYRFALRLDAWYGVYDTLYGVAHGDTLAILPSPAPALAPARRRG
Ga0308410_10613621	3300031958	Hot Spring Phototrophic Mat	RRSGADYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGAAHGDTLAILPSPAPALAPARRRG
Ga0308410_11904232	3300031958	Hot Spring Phototrophic Mat	VDYAVYRWHEHPYADDVLVERYRFALRLSDWYGVYDTLYGAHPGDTLAILPAPAPAPALARRRG
Ga0308420_10564085	3300031966	Hot Spring Phototrophic Mat	PYADDVLVERYRFALRLSDWYGVYDTLYGASAGDTLAILPAPAPALARRRA
Ga0308420_11030101	3300031966	Hot Spring Phototrophic Mat	ADDVLVERYRFALRLDTWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308420_12014581	3300031966	Hot Spring Phototrophic Mat	RRLTQYVYVTAGRFRRSGADYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGAAPGDTLAILPSPAPALAPARRRG
Ga0308403_10829612	3300031980	Hot Spring Phototrophic Mat	VYRWHEHPYADDALVERYRFALRLDAWYGIYDTLYGASPGDTLAILPAPASALAPARRRG
Ga0308403_11050312	3300031980	Hot Spring Phototrophic Mat	DVRLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLDAWYGVYDTLYGAAHGDTLAILPSPAPALAPARRRG
Ga0308407_10306971	3300032034	Hot Spring Phototrophic Mat	DDVLVERYRFGLRLDAWYGVYDTLYGAAPGDTLAILPSPAPAPALARRRG
Ga0308407_10467801	3300032034	Hot Spring Phototrophic Mat	TQYVYVTAGRYRRNGADYAVYRWHEHPYADDVLVERYRFGLRLSDWYGIYDTLYGASPGDTLAILPAPAPAPALAPARRRG
Ga0308400_10736601	3300032045	Hot Spring Phototrophic Mat	HPYADDALVERYRFALRLSDWYGVYDTLYGASAGDTLAILPSPAPALAPARRRG
Ga0308416_10261271	3300032049	Hot Spring Phototrophic Mat	GVDYAVYRWHEHPYADDVLVERYRFGLRLDTWYGAYDTLYGASAGDTLAILPAPAPAPALARRRA
Ga0308421_11198921	3300032057	Hot Spring Phototrophic Mat	RLRRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPAPALARRRG
Ga0308421_11417411	3300032057	Hot Spring Phototrophic Mat	YADDVLVERYRFALRLDTWYGVYDTLYGAAHGDTLTILPSPAPALAPARRRG
Ga0308419_10383975	3300032058	Hot Spring Phototrophic Mat	AGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPAPALARRRG
Ga0308413_042088_1_171	3300033886	Hot Spring Phototrophic Mat	HEHPYADDVLVERYRFALRLSDWYGIYDTLYGASPGDTLAILPAPAPAPALARRRG
Ga0308413_050868_927_1181	3300033886	Hot Spring Phototrophic Mat	RRLTQYVYVTAGRFRRSGVDYAVYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGAAAGDTLAILPAPAPAPALAPARRRG
Ga0308413_061929_7_189	3300033886	Hot Spring Phototrophic Mat	VYRWHEHPYADDVLVERYRFALRLSDWYGIYDTLYGASAGDTLAILPAPAPAPALARRRG
Ga0308413_070641_1_225	3300033886	Hot Spring Phototrophic Mat	VTAGRFRRSGADYAVYRWHEHPYADDVLVERYRFALRLDAWYGIYDTLYGASPGDTLAILPAPAPAPALARRRG
Ga0372965_016835_1_159	3300034646	Hot Spring Phototrophic Mat	YADDVLVERYRFGLRLDTWYGVYDTLYGASAGDTLAILPSPAPALAPARRRA
Ga0372965_037292_438_632	3300034646	Hot Spring Phototrophic Mat	VDYAVYRWHEHPYADDVLVERYRFWLRLDTWYGVYDTLYGASAGDTLAILPAPAPALAPVRRRA
Ga0372970_034617_6_188	3300034648	Hot Spring Phototrophic Mat	VYRWHEHPYADDVLVERYRFGLRLDTWYGVYDTLYGASAGDTLAILPAPAPALAPVRRRA
Ga0372972_054547_1_243	3300034649	Hot Spring Phototrophic Mat	QYVYVTAGRFRRSGADYAVYRWHEHPYADDALVERYRFALRLDTWYGVYDTLYGAAAGDTLAILPAPAPAPALAPARRRG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F092113

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences