Scaffold Ga0308412

Basic Information
Taxon OID	3300031513 Open in IMG/M
Scaffold ID	Ga0308412_1002673 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9570
Total Scaffold Genes	12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (83.33%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

9570

Total Scaffold Genes

12 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (83.33%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexia

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004307	Metagenome / Metatranscriptome	444	Y
F006252	Metagenome / Metatranscriptome	377	Y
F007404	Metagenome / Metatranscriptome	351	Y
F014738	Metagenome / Metatranscriptome	260	Y
F016100	Metagenome / Metatranscriptome	249	Y
F081391	Metagenome / Metatranscriptome	114	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_100267311	F004307	AGGA	MFKELINHNGNGRERPELNGAYTAIFRGVSQRQRPTFETRNDPEPTFEDVFVFEFEVVDADFDEPIRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVVQMSDAQLENAEEFVEKEAIGRQYQLTLETKPSGWVEIVHIAPVRARLRKTKEDEVPF
Ga0308412_100267312	F081391	GGA	MKSRSKNEPRWKRKERDALRALQAVFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKML
Ga0308412_10026732	F007404	GGAGG	VDIIEILQLLAAGHNGLTTLDYAWNALFGAIGAATAYLADNEGEVILPRYDAEQHSIELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPILIDKVTAFVGRGRK
Ga0308412_10026733	F014738	N/A	MKLDVLLLISAFALAFVHPDAAQVAATAVLVLLVTRIERGRRARKKKSAPVVH
Ga0308412_10026736	F016100	AGGAGG	MVVSIKIERFKEYSELVRVLSRSEACPATNKDRIVPLNHELLIGSHLPEPDWHRLGALVVALFRSFAVVDVEIWQTNAGTWVADALVDFGDRRRLRKGGGDTPLQAMIELVYDIQRY
Ga0308412_10026738	F006252	AGGGGG	VRSFDEQAAFGLPYERLIAQTAALLLYPHRLDLTLMRLDAYAPLDYLLLDGDCPIAALEVKRRSVRSDTYRTTILPQSVVDAARRLTIPVYAAILFIDGLAVFDVLRTPSTARWLRTRRGALRKHREYDVRERMVRLEEVHQPPRRSA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308412_1002673

Overview

Ecosystem & Geography

Associated Families

Sequences