Scaffold Ga0308412_1001138

Overview

Basic Information

• Taxon OID: 3300031513
• Scaffold ID: Ga0308412_1001138
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14329
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 21 (80.77%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F004024	Metagenome / Metatranscriptome	456	N
F008135	Metagenome / Metatranscriptome	338	Y
F066811	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0308412_10011381	F002795	N/A	EFVSRKDGRLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYTRGETVELPARMQFLRDGSGKPLIRLYVGEGVR
Ga0308412_100113812	F004024	AGGA	MHSERDYLRQPLDDDDMMFLDARATLAAALARAVVGYSDGRVRALAWLSIATPRLYERIAPIIGSVAIRQSPGASRTLRDALRALSLEEYVRRRDERRSER
Ga0308412_100113814	F002229	GGAGG	MVTLLTADGVEEVDYTPSDAEIRLSLDDAGLYGMLLRGVTWMRLPSGAGWWTVLFGRRLTVTLAPVGWCWVMDGLGNRGYWSAALSAVVADVCAMYGGAVED
Ga0308412_100113815	F008135	AGGAGG	VRAMNDPRTERVLTEAGAAVARVLDARQRHAVALALEVCSYIVAALPPDNDVTFGDMVRLIKWFAGGFKDAEADDGDG
Ga0308412_100113816	F002795	GGAGG	MATDNGLVLRGMVAAYREFVSRKDGRLFRVVTVFGDLMVGEVVLCAVDGYDVFVDTPGYTRGETVELPARMQFLRDGSGKPLIRLYVGEGVR
Ga0308412_100113817	F002372	AGGGGG	MPTRREDALWSVVHRESSHLRALLDSLDLVDVNVTYELDYYPCAIVELLRVREDSPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
Ga0308412_100113822	F066811	AGGAGG	MEFNSQPQFNAPNMTDILNAATSIFNPFVGVLALAIGVTLGARMLGRIVNLF
Ga0308412_100113825	F001381	GAG	MQYVVATLYVLLWLALAALAALWLPRWALPAALVQLAVAYVMVRSWLTAAVGGDD
Ga0308412_100113826	F000642	AGGAG	MQEMSVALALCAVGAAVWYMRRREAGAGRVRGWLLLYDDLGGWRALPAAYGDSGIVADGVTYPASLPALRAGRELIWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVMGVVLPAVFAYFTWAQVSALQSLVAQILALVGER
Ga0308412_10011389	F000855	GAGG	MDWLEDFWSKIVAWLDQVSASVHNSIIGWVNSLVDIWNGWMDALLHPAQAMPSSPALRFIVDWLGDIADYTRLMYMLVDYVAYASVVQQALIAQLTIVTIGLGFRAWLVIRRVVLVS