NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1000218

Scaffold Ga0308412_1000218


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1000218 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27933
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (92.31%)
Novel Protein Genes17 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)17 (100.00%)
Associated Families17

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F006252Metagenome / Metatranscriptome377Y
F006418Metagenome / Metatranscriptome373Y
F007404Metagenome / Metatranscriptome351Y
F010840Metagenome / Metatranscriptome298Y
F012577Metagenome / Metatranscriptome279Y
F014738Metagenome / Metatranscriptome260Y
F016100Metagenome / Metatranscriptome249Y
F051735Metagenome / Metatranscriptome143N
F072382Metagenome / Metatranscriptome121N
F074922Metagenome / Metatranscriptome119N
F081391Metagenome / Metatranscriptome114N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_10002181F081391AGGAGLTKCRSKSEPRWKRKERSVLKALQATFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAV
Ga0308412_100021810F014738GGAGGMKLDVLLLISAFALAFVHPDAAQVAATAVLVLLVTRIERWRRVRKKKSAPVVH
Ga0308412_100021811F007404AGGAGMDIIEIFRLLAAGHNGLTAIDYVWNAVFGAIGAATAYLADTNGEVFLPRYDPEQHSVELGALGRVLVGAGAGVLVGYSGYVPFVAGVVAPTLLPALIDKIAWFVERRRR
Ga0308412_100021814F012577AGGAGMLVAIAKPHQQFTIPLTVADYEFSTSDDGDERGRVTLPPVYARSGVMTQIGDELIVYCTQLSRTIWRGQIERIEEAKDGSITWHALGFGALQRDARISVVRNMSDMTRWQPVGAGFMAGSGYDSRGDLWEHELVSYSGYVLVHIRTKKTFTISNTTLFFIAYLFDQPQHYYKIENIERIFVYESSSGLASGVWVAPVVTVVQTTTYQLALGTFNSINTSGSVIAGNCFGWVIGVRASGNETTAGLTSVWVRAEINNLTSGAIDETLLSTALLVRGGCCTIHLPANTKASITKPDANVRDIIENAEDTTTRYHIKRFLRDRPRPTIDFRTDSPLVWRFPETTRVVDISKAPNRVYAQYPGYLADYLTAPTTIQSLETRRHLAKRFASVGAYDNTSIAETRRDEAAVALDRQIAPLTIELDNSRYELMTREGVTVPNWAADVSDYAIVSGYFRNAKITSRTITRDRTTYTVSFNPDDFVTAL
Ga0308412_100021818F004791AGGAGGMTTPAEIYDIEALRVDRSALTIREAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKRVYERVLPQIFEPDEAVRSRVAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDTIGNEGNE
Ga0308412_100021819F005302AGGAGGMAHSGVLAGLYAGNFAVEISTDNTAWTAVSNANVKIDDVELNRPSGEAFVGGSSDYATITIGKREPVEITLTFLYNEDANSAANTIFDQFQSTSPRLGVRWSPRGLVGSARAYGTSNDGGTSFGLGVITNVTLSALDPSDAEPYVAMVTVRTPSLRRYTLGSSPTNLNPAP
Ga0308412_10002182F004307AGGAMFKELISNSGNGRERPELNGAYTAIFRGVSQRQRPTFETRNDPEPTFEDVFVFEFEVVDADFDEPIRVSKWVRKPKRLTHPNGGKVTNLYKTLAALYGVVQMSDAQLENAEEFVEKEAIGRQYQLTLETKPSGWVEIVHIAPVRARRKEKPIDEVPF
Ga0308412_100021820F002970GGAGMSFSTLVDIVELLAGLVVQFDGNAVPVQRLTTQPNWTDAAELPVRIIPALGGLRLVEGGVYTPTRSMRAVWEIDDLLLVRDVGMGRGVADTATPLVAYIEQYVELLRFAWLARGDVQLLNVSGIVDVVRYGERAYEGVVMTTRFAHLVRAPSP
Ga0308412_100021825F005631GGAGMRVSVSVDLDNALRKLLPRSAQIEAALDAGAAAAHGVMQVYPPPPAGSRYRRTGNLRQKLRIKKLSKTSRIVENTASYARFVYGMPQARVHRGRWVSLKDAAEAALKEALAVLKERGR
Ga0308412_100021829F010840AGGAGGVNLPFTRPLDKITFGALAAATVVVLAWALREFAGIDLPAEVQSALTVMIGYVVSYHIPLSEVEAKAIAQTFYRK
Ga0308412_100021832F051735AGGAGGMFQDVIIINGPIPKNGVADYERVRIKARPLGRPYVWDNTPAWNKERAATNGGFFLVFEAEDGSVYIQEIEWEVDPYPDATPDPRTYYFYEVYASLAEARAGGRGWLVEYVLS
Ga0308412_100021833F006418AGGAGMPKRRSAPKPAREREIVVASGGDFRILFDRETRDYAVEYRGEPVGWRPTEAEARRLVETLRYEDAQRGKEA
Ga0308412_100021835F074922AGGAMVDSMLAQFLNVALDLQTPAYAGVRVTNGTLMASDGVVLVAYRLSSEYIRGEGMIPPATARALAALANDVYLDYIEVDGTAVNLVTREQYEDRSERLIVSFPPFACRVLRIESFLPRCLPPDATLLCEAPSLKLVKTLRSSEFVELVDAPKRGSELFQRKMPNAKVWYSVRQLREGLRLFRARDAVSVFRNEQGWLSFRDDWGRLFAVTPFVKRD
Ga0308412_100021837F002982GAGGMKLQFERHPHAICVVLTDAGECDRIITVARASDAIDALALDIHTAALKPLDALFALPRVVCVEIEQRSGGWRVEVAYWHKGLGTLAQYEEDAATLSEALARCVWALAR
Ga0308412_10002185F006252AGGGGGVRSFDEQAAFGLPYEHLIAQTALLLLYPQRLDLALVRLGAYAPLDFLIVDGGRPVAALEVKRRSIRSDTYRTTILPQSVVDAARRLTVPTFAAILFLDGLAVFDVLRTPSTARWLRTRRGALRKHREYDISERLVKVEEVHQRQRRSA
Ga0308412_10002187F016100AGGAGGMVTSVKVERFKEYSELVRVVSRAEKTPATNKDRIVPLNYELLVGSHLPEPDWHRLGALIVTLFRSFAVIDVEIWQTDAGLWVADALVAFGDRRRLRKGEGDTPLAAVIELITDIQRY
Ga0308412_10002189F072382AGGAGGMKTVYHTKDVYFPAFSIKIEPEPGTWFADVYVRYTNALNDKYNAYIGANDFLAGTPIPARDRRDLAKAIESLVFDYGLVDLVIYPTREGWGVSITLCPELENQYLHGTGATPADAIRNSNYPPPLRDL
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