NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308412_1000143

Scaffold Ga0308412_1000143


Overview

Basic Information
Taxon OID3300031513 Open in IMG/M
Scaffold IDGa0308412_1000143 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20070728_OST1-BottomLayer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32389
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (93.02%)
Novel Protein Genes18 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)16 (88.89%)
Associated Families18

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5341Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F002982Metagenome / Metatranscriptome515Y
F004307Metagenome / Metatranscriptome444Y
F004791Metagenome / Metatranscriptome423Y
F005028Metagenome / Metatranscriptome414Y
F005302Metagenome / Metatranscriptome405Y
F005631Metagenome / Metatranscriptome394N
F006418Metagenome / Metatranscriptome373Y
F007404Metagenome / Metatranscriptome351Y
F007976Metagenome / Metatranscriptome341Y
F008499Metagenome / Metatranscriptome332Y
F010840Metagenome / Metatranscriptome298Y
F012577Metagenome / Metatranscriptome279Y
F016404Metagenome / Metatranscriptome247N
F019420Metagenome / Metatranscriptome229Y
F031016Metagenome / Metatranscriptome183Y
F067304Metagenome / Metatranscriptome125Y
F105262Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0308412_100014310F031016AGGAGGMATIRIWSGSRRTVCGEDYEFVKYEEFEGETLGACWEEENSRGTQTTFYQTNDGRIVAHVVRWSRWENEATYAYVHVFPSMGGVNGAAAMFWRELRKAGLIPPRAVELDE
Ga0308412_100014319F005028GAGGMRNDDLRAAMSFFTARLRGAETTEAGLLRWTRHKLRNDARAVAELMLTVGYRPTYIRYFLRYHIPALNESAAVGETYTDPGAADAHLGLCWRLDENVVAALSDLHAAAKRLRQPYRDLAAVCLRWGYVHETVVQMLAKALERK
Ga0308412_100014320F008499GGAMKSRSKSEPRWKRKEREALKALQATFGRVSDPSLARLLTSTGRVGHLTRFGVDGFVGDNPGFAVEVKARRKMLTKPTLDALLQTIDRAARFERIPLFVLVFGDDVPTRTENGARVDREWVMMPRRVLDELVGKNKEDGDA
Ga0308412_100014321F004307AGGAMFKELIANGNVGRERPELNGAYIGRFLGVKERQRPTFETRLSPEPELEDVFVFEFEIVDADLDLPVRVSKWVRKPKRLAHPSKSGKVTNLYRVLAALYGVAQMTEEQLLGAEEYVQTVAVGREYQLTLETKPSGWVEIVHIAPVRARLRKTKEDEVPF
Ga0308412_100014325F019420AGGGGGMATYRDVIFWSGATDGDCEATAIRARLLGMVIELGDDDKRPDKMTAFYEADGGGIIVYEVDCFEADKRMVARWQRVASLEEVRRRYAAYLGRLAL
Ga0308412_100014329F007404GGAGGMDIIEIFQLLAAGHIGLTALDYVWNAICGAIGAATAYLADNEGVALPHYDAEHHCVELGALGRVLVGAGAGVLVGYSGYIPFVAGVVAPTLLPMLIDKITWFVGRRQR
Ga0308412_10001433F016404N/AMTVDELLTDEARAAVLRALLMIVLDEDVPASARVAAARLFLLQFEKASNAGDAVVIVDEATSDTTV
Ga0308412_100014332F012577AGGAGMLVAITKPHQKFPVPLTAADYEFSTSDDGDERGRVTLSPTLARSGVMTQIGDELFVYCTQLSKTIWRGQIERIEEARDGSITWHTLGFGALQRDARISVVQSMTDITRWKPVSTGFMGNGGYDSRGDLWEYEIVLAIGVPHAQIRTKKTFTISNETLFFIAYLFDQPERYVTITTNERLFVSLTSSTGLADGVWVAPVTAIPEPNAYSLSLGTFTGISLSGTVTATTCYGWVIGVRASGDETTAGDTSVQVRAVINSSDTIGINAFTLTSAMIQRGGCCDIVLPPQTTTRIVKPDANLRDIIERSGDDFVRVRYHQKRFLRDRPRPTIDFNTDSVLVWRFPEITSVVDISKAPSRVYGQYRGYWTDHLTETTSITSYETRRQLAQRTTSVGEYGSKALAEERRNETAVALDRQIAPLTIDLDNSSYELMLRTGETVPNWAADVGDYAIVPGYFRNAKITSRVITPNRTTYTVSFNPDDFVTALR
Ga0308412_100014335F067304N/AMRRDQRLIPPLCAQRSKVLRHAPKRLTVKYVGRAVVDVSTQYQFGIRGGQRREVEQT
Ga0308412_100014336F004791AGGAGGMTAPAEIYDVDAIYVDRNALLIRDAATLLNRELTPEVVACLVRRAIGSQADLFPIRALKRVYERVLPKIFEPDAAILSRVEELTPNIAAITLGEYHEFLDASERKVAFPEVAKTLLVKAYGEGVLEEPYAAAALLLKKIFDVVGNEGNE
Ga0308412_100014337F005302AGGAGGMSHSGVVAGLYAGNFAVEISTNGTTWTAVSNANVKIDDVELSRPSGEAYVGGSSDYATVTVGKREPIEITLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVSQARAYATSNDGGATTGLGVITNVTLSALDPNDADPYVAMVTVRTPSLRRYTLGNDPTNLS
Ga0308412_100014338F002970GGAGMSSSAVADIIELLAGLAVQYNNTVVPVRRLSTQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTATALVDYIEDYVARLRFAWLTRGDVQLLNVSGIVDVVRYGERAYEGVAMTTRFAHLIRAPSA
Ga0308412_10001434F010840AGGAGGVNLPFSRPLDKVTCGALAAATVILLAWALREFAGIDLPAEVQSALTVMIGYVVSYLVPLNEAEAKEIAQTFYHK
Ga0308412_100014340F105262AGGAGGMLVQETIQPLLRYFNAAASGADTPVVSIANAQAVRIVAHTGTVTDTASLQVHVNDTNNTNNSAQLTDKAIASLASNRTYEIFVTGAEAYAAKPHASHMFVRIAGTGTAQIAIEISAFPARDVPVTLPTGWTRVL
Ga0308412_100014343F005631GGAGMRVSVSVDLDNALRKLLPRSAQIEAALDAGAAAAHSVMQVYPPPPAGSQYRRTGNLRQKLRIKKPSKTMRIVENTASYARYVYGMPQARAHRGRWASLKDAAEAALKEALAVLKERGR
Ga0308412_10001435F006418AGGAGMSKRRSQPKPQPAREIVIAAGQDYRILYDRETRDYAVEYRGEPVGWRPTEAEARRLVEALRYEDAKRA
Ga0308412_10001436F007976AGGAMLSTELARFLDVALDVQAPPYPGIHVDFGLMVASNGVMLVAKKYNNPAYLRGRGSLSPKAAKVLVALAEATHIGSIEVNGNRVTVTAQSTWYDEKVGAEVAGEYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKDYVALVDSPHGGYELFRLRNIDDAHWYSVAQLRCGLRLFGKHSSLIVRRSKDGWLAFGDQFGYTFAITPFVKHN
Ga0308412_10001439F002982GGAGGMKIQFERHPHTICAVLTAPGECDRIITVDRASDAFDALALDIHTAAFMPLDALFALPRVVCVEIERRNGGWRVEVAYWHKGLGALAQYEEDAATLSEALARCVWALAR
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