NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308397_1001997

Scaffold Ga0308397_1001997


Overview

Basic Information
Taxon OID3300031512 Open in IMG/M
Scaffold IDGa0308397_1001997 Open in IMG/M
Source Dataset NameHot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20051001_T8
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10662
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (78.57%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002970Metagenome / Metatranscriptome517N
F004791Metagenome / Metatranscriptome423Y
F005302Metagenome / Metatranscriptome405Y
F037517Metagenome / Metatranscriptome167Y
F081390Metagenome / Metatranscriptome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0308397_10019972F037517GGAGGMRVRQIGTLVFDANTNIVVDASNQDAPGIGFRVNDLYDPQPFSVEIAFRRATREQALNAVNTLARELHSYAQRRQDDRLAIAGGALVVVEDAAGNATLRSYLRDGSVTLLGVETTSTGVIVRARVAGTLVNPFLNYNQTVTSVLGLRPYERRVVALNVPDGYLYKSPLQWIPSNMTGLYNVLLAVEDLGSATGTSRIQAISPASVSGGITIQSWNAGWQTLARGNFTSATSGTITYTIPPSVPPDVYRLFIEIHCPSTPPSNARYVVSWPEQPQVAETISGDRSWYTPTLITPYIFSFPLTLEIQNVPVGTLVMPLVLIPIDGVFVWNAIAPPTLPYVYIIDPQITQTRTFVISPNGTVYGSPGLISSRYVAVFSGAMASMITNASADMYFYSRRIEPAAFA
Ga0308397_10019974F081390N/AMRRDQRLMPPFRAQRCEMLRDALKRQTVKRVGRAMVDVPTQH
Ga0308397_10019975F004791GGAGGMEKPAEIYDIDAISVDRSALTIREAASVLNNELTAPVVARLVRKAIGDQADRFPLRALKRVYERVLPQIFEPDEAVRSRVAGLTPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEEILNEPYAAAALLLKKIFDSIGDEGNE
Ga0308397_10019976F005302AGGAGGMSHSGVIAGLYAGNFAVEISTNNTTWTAVSNATVKIDDVELSRPSGEAYVGGSSDYATITVGKREPVELTLTFLYNEDTGSAANTIFNQFQSTTPRLGVRWSPRGLVSQARAYATSNDGGATFGLGVITNVTLSTLDPSDPEPYVAMVTVRTPSLRQYALGTNPTDLS
Ga0308397_10019977F002970GGAGMSFSTLVDIVELLAGLVVQFDGNAVPVRRLTTQSNWADAAELPVRIIPALGGLRLVEGGVYTPTRSMRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVAQLRFAWLARGDVQLVNVSGIVDVVRYGERAYEGVAMTTRFAHLIRAPSA

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