Scaffold Ga0308399

Basic Information
Taxon OID	3300031509 Open in IMG/M
Scaffold ID	Ga0308399_1005020 Open in IMG/M
Source Dataset Name	Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	3981
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (66.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

3981

Total Scaffold Genes

8 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location Name	USA: Wyoming
Coordinates	Lat. (^o)	44.5341	Long. (^o)	-110.798	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wyoming

Coordinates

Lat. (^o)

44.5341

Long. (^o)

-110.798

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002978	Metagenome / Metatranscriptome	516	Y
F066811	Metagenome / Metatranscriptome	126	N
F069556	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308399_10050201	F002978	N/A	MLVPWADRRLWFLQARRGRRVVWGVVYDAADPDSVALARRAIATLRAAGADCSSLPSPLPAAGGQEP
Ga0308399_10050202	F000642	GGTGG	MQEISIALAICAVGAAVWYMRRRDVGAGRVRGWLLLYDAVGGWRVLPAVYGDSGVVADGVTYPASLPAVRAGRELIWIARCESAALIEHQALERAREAAALASLWKGGGQWLDFLRIVGVVLPAAFAYATWAQVSALQSLVAQILALVGER
Ga0308399_10050203	F001381	GAG	MQYVVATLYVLLWLALAAAAALVLPLWALPAALVQLAVAYVMLRSWLTAAAGGDD
Ga0308399_10050204	F000855	GAGG	MDWLEDFWSKVVGWLDELSAAVHNGIIEWVNSLINVWNGWMDSLLHPAQAMPSNSALRWIVDWLGGIADYTRLMYMLVDYVAYAWIVQQALTAQIGIVIVGLGFRAWLVVRRVVLVS
Ga0308399_10050206	F066811	AGGAGG	MEFNNQPQFNAPNMTDILNAATSIFNPFVSVIALAIGVTLGARMLGRIVRLF
Ga0308399_10050208	F069556	N/A	RWSRVAGAEWRADVRRVAHDGVAAVARYLTTDGISGASYEVASPAAKVPAGRSYTQLLWDYARYRSSADAALVYEYAAALHGVHHLTVSPRLRRLYDFVDPALGWSQIADEDVLALLNSDEWLSILNSGEERNLLDDLGRLC

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0308399_1005020

Overview

Ecosystem & Geography

Associated Families

Sequences