Scaffold Ga0308399_1001488

Overview

Basic Information

• Taxon OID: 3300031509
• Scaffold ID: Ga0308399_1001488
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7824
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (86.67%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000642	Metagenome / Metatranscriptome	965	Y
F000855	Metagenome / Metatranscriptome	859	Y
F001381	Metagenome / Metatranscriptome	709	Y
F002229	Metagenome / Metatranscriptome	580	Y
F002372	Metagenome / Metatranscriptome	566	Y
F002795	Metagenome / Metatranscriptome	529	Y
F002978	Metagenome / Metatranscriptome	516	Y
F004024	Metagenome / Metatranscriptome	456	N
F066811	Metagenome / Metatranscriptome	126	N
F069556	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308399_100148810	F000642	GAGG	VQEISIALALCAVAAAVWYMRRRDVGAGRVRGWLLLHDDLGGWRVLPAAYGDAGVVADGVTYPASLPVVRVDRTLVWIARCDAAALIEHQALERARESAALASLWRGGGQWLDLLRVLGVVLPAVFAYFTWAQVSALQSLVAQILALVGK
Ga0308399_100148811	F001381	GAG	MQYVIATLYVLIWLALAALAALVLPRWALPPALVQLAVAYVMLRSWLIAAAGGDDGA
Ga0308399_100148812	F000855	GAGG	MDWLEDFWSKIVSWFDELSAGVHNGIIAWINSLVDIWNGWMDSLLHPAQAMPSNPALRFIVDWLGGMVDYTRLMYMLVDYVAYAQIVQQALLAQLAIVAVGLGFRAWLVIRRVVLVS
Ga0308399_100148814	F066811	AGGAGG	MEFNNQPQFNAPGMTDILNAATSIFNPFVSVIALAIGVTLGARMLGRIVRLF
Ga0308399_100148815	F069556	N/A	RWSRVAGAEWRADVRRVAHDGVAAVARYLTTDGISGASYEVAGPAAKIPAGRSYPEILWDYARYRSSADAALIYEYAAALHGVHHLTVSPRLRRLYDFVDPALNWSEIADEDVVALLNSDEWLSILNSGEERNLLDDLGRLC
Ga0308399_10014883	F002372	AGGGGG	MPTRREDALWQIVHRKSSHLRALLDSLDLVDIGVTYELDFYPYAIVELLRVREDAPPLVLRSVYVQANRQWEYHSEFALRVVEAALQLVHEYRADPSLGGAEAVFV
Ga0308399_10014884	F002795	GGAGG	MATNSGLMLRGMVASYREFVSRTNGKLYRVITVYGDLVAGETVLCTVDGYDVFVDTPGYARGEMVELPARLQFLRDGSGRPVIRLYVDEGVR
Ga0308399_10014886	F002229	GGAGG	MVMLLTVDGVEEVDYTPSDAEVRDALFDAALYGMVLDDVTWIKSSSVVGWWTVIYGKRVTAAMAALGWCWVADGCGDRGYWSPSLACIPGEVRALCGGCGAEYVEVRRAR
Ga0308399_10014888	F004024	AGGAGG	MHSERDYLRRPSLNDDDMMFLDARATLAAALSRAVVGYSDSRVRALAWLSIATPRLYDRIAPVVESSAIRQSPGASRTLRDALRALSLEEFVRRRDERRDGR
Ga0308399_10014889	F002978	GAG	MRDWRVMLVPWADRRLWFIQARRGRRVIWGIVYDAGDPDSVALARRAVATLRSAGADCSALPSLLPGSPAPGA