Scaffold Ga0308399_1000219

Overview

Basic Information

• Taxon OID: 3300031509
• Scaffold ID: Ga0308399_1000219
• Source Dataset Name: Hot spring phototrophic mat microbial communities from Octopus Spring, Yellowstone National Park, Wyoming, United States - 20060914_OS12-60
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20258
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (81.48%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Associated Families: 11

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 44.5341
  • Long. (^o): -110.798
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002970	Metagenome / Metatranscriptome	517	N
F004791	Metagenome / Metatranscriptome	423	Y
F005302	Metagenome / Metatranscriptome	405	Y
F005631	Metagenome / Metatranscriptome	394	N
F006418	Metagenome / Metatranscriptome	373	Y
F007404	Metagenome / Metatranscriptome	351	Y
F007976	Metagenome / Metatranscriptome	341	Y
F010840	Metagenome / Metatranscriptome	298	Y
F012577	Metagenome / Metatranscriptome	279	Y
F014738	Metagenome / Metatranscriptome	260	Y
F067304	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0308399_100021910	F067304	N/A	MRCDQRLVPPLRAQRRKMLRDAPERLTIKRVGRAVVDVSAQHQFCVRGGQRREVEQT
Ga0308399_100021911	F004791	AGGAGG	MDKPAEIYDIDTIRVDRNALTIREAATVLNNELTAPVVARLVRKAIGTQADRFPLRALKAVYERVLPKIFEPDEAVRSRVAGLVPAVGEITLGEYHEFLDASERKIAFPPVAATLLIKAYGEDILNEPYAAAALLLKKIFDSIGDEGNE
Ga0308399_100021912	F005302	AGGAGG	MSHSGVLAGLYAGNFAVEISTDATTWTAVSNATVKVDDVELNRPSGEAYVGGSSDYATVTVGKREPVELTLTFLYNEDTNSAANTIFDQFQSASPRLGVRWSPRGLVGSARAYGTSNDGGTSFGVGVITNVTLSALDPSDADPYVAMVTVRTPSLRQYTLGSSPTNLNPAS
Ga0308399_100021913	F002970	GGAG	MSYSSVTDIIELLAGLAVQYNSAVVPVRRLSTQPNWSDAAQLPVRIIPALGGLRLVEGGVYTPTRATRAVWEIDDLLLVRDVGMGRGVADTAAALVDYIEDYVARLRFAWLTRGDVQLLNVSGIVDVIRYGERAYEGVAMTTRFAHLVRAPSS
Ga0308399_100021918	F005631	GGAG	MQVSVSVDLDNALRKLLPRSARIEAALDAGAAAAHGVMQIYPPPPAGSRYRRTGNLRQKLRIKKLSKTLRIVENTASYARYVYGMPQARVHRGRWASVRDAAEAAKKEAIAVLKGR
Ga0308399_100021922	F010840	AGGAGG	VNLPFSQPLDKVTYGALAAATVIILTWALREFVGIELPAEVQAALAVIFGYVVSYHIPLNETEAEAIARKYYKHK
Ga0308399_100021923	F006418	AGGAG	MSKRRSQPKTQPAREIVIAEGEDYRIIFDRETKDYAVEYRGEPVGWRAYVEDARRLVEQLRYEDARRGE
Ga0308399_100021924	F007976	AGGA	MSSTELARFLDVALDVQAPPYPGIHVDFGLMVASNGVMLVTKRFDDKVFLRGKGAISPKAAKVLVALVEATYIGSIEVNGNRVTVTAQSTWYDEKAGAEVAGGYREVTLPELYCRQIPIKRMVEVLDDKALGWEVLPLSSNPKLKTLKEANAKDYVALVDSPHGGYELFRLRNIDDAHWYSVAQLRCGLRLFGKHSSLIVRRSKDGWLAFSDQWGYTFAVTPFIKHN
Ga0308399_10002193	F014738	N/A	MKLDVLLLISAFALAFVHPDAAQVAATAVLVLLVTRIERGRRARKKKSAPAVR
Ga0308399_10002194	F007404	GGAGG	VDIVEIFQLLAAGHNGLTAVDYVWNAVFGAIGAATAYLADNEGEVILPRYDAEQHSIELGALGRVLVGAGAGTLVGYSGYVPFIAGVVAPTLLPILIDKVTAFVGRGRK
Ga0308399_10002197	F012577	AGGAGG	MLVAITEPHQHFPVPLTVADYEFSTSDDGDERGRVTLPPGYARSGVMTQIGDELIVYCTQLSRTVWRGQIERIEEARDGSITWHALGFGALQREARISVVQNVISTTKWKPVGSGFMPNSGYNSRPDLWEYEFISGNLFITIRIVTKRTFTISNSTLFFVAYLYAQPERYATITSNERLYVGVTRTGLATGVWVAPVTAIPQPNTYTLTLGAFSSINNEGVITASTCYGWVVGVQASGNETTVGATSVAFLARINDPGTGGINAGPLSTALIARGGCCDIYLPSQTIVDIENPNANLREIIEHVRTDYSSVRYHLKRFLRDRPRPTIDFRTDSTLVWRFPETMRVVDISKAPSRIFAQYHGYWTDHLTATTTIQSLESRRQLARRVAGVGEYSSKTTADARRDEAAIAMDRQIAPITVELDNSRYELLTREGVAVPNWAADVSDYAIVPGYYRNAKITARVITRERTTYTVSFNPDDFVTALR