Scaffold Ga0307509_10003010

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10003010
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 26349
• Total Scaffold Genes: 30
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F046104	Metagenome	151	Y
F087984	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_1000301013	F046104	N/A	VVCGNIVGGNPVEVTPMKVASLFSRGRDDQSGASGPTSVMPWRRRDLLCCLEGQERMACSKVSGSKPQRGQEVSASGDLQVGWAAR
Ga0307509_1000301020	F046104	N/A	VVGGNIVGGNPVEVMPMKVASLFSSRRDDQSGASGPISVTPWRRRDLLCCPEGQDRMACSKVSGSKPQRGQEVSGSGDLQVGWAAR
Ga0307509_1000301021	F087984	GAG	VLGGGSYFYGLVGFDFSYDEVKRAVVIGLIGFFLFIASAP
Ga0307509_100030103	F046104	N/A	VVGGNIVGGNPVEVTPMKVASLFSCGRDDQSGASGATTVMPWRRRDLLCCLEGQDRMACSKVSGSKPQRGQHVSASGDLHVGCAAR