Scaffold Ga0307509_10000001

Overview

Basic Information

• Taxon OID: 3300031507
• Scaffold ID: Ga0307509_10000001
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 629324
• Total Scaffold Genes: 557
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 435 (78.10%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 46.0356
  • Long. (^o): -122.86

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001441	Metagenome / Metatranscriptome	694	Y
F013926	Metagenome / Metatranscriptome	267	Y
F044005	Metagenome / Metatranscriptome	155	Y
F047908	Metagenome / Metatranscriptome	149	Y
F050738	Metagenome	145	Y
F098787	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0307509_10000001193	F098787	GAGG	VGTESIADIVSNYELTIACEKCGAQTPRTIGWIRQHRDMKCPECDAIIVLNTSRITGTIRSVERRLGDLRTQLTERIRKL
Ga0307509_10000001356	F047908	AGGAG	MELEDALNLGLPPHHVTRCDQGDTVAFRAEIPGYPQCTGYGATADEAVRGARHLYAQLRDGQAAVKVSDLEEERAERLREAIRSVVTRALV
Ga0307509_10000001358	F044005	GAG	MDDVTSVESAGKSARTKRPVVLIVALVLAILGAGGLAAYAQWLEQQRVHLQTLLGGQERKVLELREQLTKAEVALQEKDAALASREVALADATQPELPVRVAFRPAWMGQGMVASFRNVGAEQLTLMVEFRDPNLHASRDFAIVVEGGATAEVGHPEGWLVTSGQSVRVSASGFKSVTAFAP
Ga0307509_10000001402	F001441	GGA	MNLSLVDAFAKFGAKPTNRQRARSAIAADGAMVLNCLHGYFGHPAQGVLRYEDRLSRDSTDVNGTGLLSKHLTLARDGALPVRMVVTSVVTEKSPTRSFHVRSDLIGKVVTFDGDHFIIDFTRQEEIKKVAAGRGK
Ga0307509_10000001557	F013926	N/A	GAKRDLLPTCDISLWSQISGEDVMKGLDSIVRMFVLGQGTGLRWLREELDALQVSIPLTDSCLNELVRDADAAVRRASTNKEQSYVERLRAELVSRAAFIQRWTGSDEKLSQRDEESLQALVRIARKYALPRRWKLSEPVVVEYRRLRPSDWQWTRDLDVGAVAS
Ga0307509_1000000191	F050738	AGGGGG	MTKVVFATCLLVAFSLAGGAAAAKDPTQLLLHKGARVGIVNMMDSEVTHFHTAKVLAQSFLKTQLVSWQVESMLNDAVTARLAQLELVAVPLGASDSLLRNRDEYFVNNSVAKGLSRDIAREFAQLAASEHLDALVVLAPGLNNSSQASGAVRRGLPDYLRGWGFVTDDANSKPSLFNMSQVLLIGVAGGTAQLNAREWGGGYADEWPDYVAPANPKDMPPDQLDKLQPLFSRILGRQAARALDYITVSP