Scaffold Ga0272434_1001160

Overview

Basic Information

• Taxon OID: 3300031473
• Scaffold ID: Ga0272434_1001160
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Trio Nunatak nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 59376
• Total Scaffold Genes: 70
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (7.14%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.5
  • Long. (^o): 159.59

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002432	Metagenome	559	Y
F005901	Metagenome	386	Y
F008169	Metagenome	337	Y
F032884	Metagenome	178	Y
F080688	Metagenome	114	Y
F081945	Metagenome	113	Y
F104131	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272434_100116029	F002432	N/A	MXKSLCKRLRITASLFTVYHSEINDQSKQVNQDVECELRIYCNYMQNDXVKXIFMMKFSNNFNIFLITSMIFFYFNKEFHSXMSFNSDTTDYKMTYEXLKARKTDNIVIQIKELLSFNHQQLEKMKLIIEVQINKYKXNVTYEVNDXVXLSFRNVKTMRLCKDLKDKQLNLYQITAKINIFYHFHLSVSMKHLHSIFSLKLLXLYSEDSLSEQHSESLRSITIKDDEHXKINDILNFRRYQDQIQYKVKXKDLDRNDEXYYVNKKKFNNSEKVLNEFHKLYSSKLH
Ga0272434_10011603	F005901	N/A	LNSFIFTDEDELTXNSXRVKINDKLQTNINHFDNENICIIYVISRLEDDAVKHIFAXYXHDALHSYILINELFKHLKEIYDELNRNXKCRCKYNALKQADKSFNVFYFNFMKLFNYLEYDDCTLINDLQNKINNCLQNILSICSENFTSLTHLRIFLQDVNNKQXVNYQLRSQLCIVIIKVTVISDKYAATSLLMMTLIINYVKSIIFSIFESDQVKSSIICYICKILKHLFKNYS
Ga0272434_100116031	F080688	N/A	MLXTLMTQAEMHXITHSDVHQSLNFKDLHEKQTVELMISQLSEHSIEVQLSDHL
Ga0272434_100116041	F008169	N/A	MFYEIXKAQSLALDKETDQLYKLNKQQEDEIKELKTRLQTKENTSSDFIYSERSRFQKISDSSLFTDEKNFTXKNXYGKIQNKLEINVNLFSNEXVKLSYIHSRLFNDAAEITQTRCERDCVNLYKIIEDLLKELAQLFNDLNKKVNFRRKYYNLIQESKKFSEFYTQFQRLSFYLDYHEKQLIVDLKDKIHSHLXFIXVNQLIQSDFLKEIHFYLIHLNNDQRVIQEIKNKLKCVNDVSKTIFHKVTIIIQSVDYLKFDNLKSRNAILTNVKEANILVKRCFICHKSDHSFKECLDQSTRINAVNNEYDCFNFDFNFNSKN
Ga0272434_100116042	F081945	N/A	MFSHSFIEEYSEEFRNRFSQISDADSLKSSSAASFIHEDDESFAETIISLMFYEI
Ga0272434_100116051	F032884	GAG	MTIRNERVEHEECKETKKNESMMTRIEQERLYKQTIDVIDQXKDIKQRLXSDYM
Ga0272434_100116070	F104131	N/A	MSHFFKERFEASFFIVEDNDSFAEIITSSMIMKALKKRCEELKARLQAREIISSSSIYSERSRSQKILDSSLFTDEKNSI