Scaffold Ga0307513_10031867

Overview

Basic Information

• Taxon OID: 3300031456
• Scaffold ID: Ga0307513_10031867
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5958
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Tuberaceae → Tuber → Tuber borchii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F045459	Metagenome	152	Y
F052297	Metagenome	142	Y
F092968	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_100318673	F092968	AGGAGG	MRESLASEGISTHALGGGRRRDVEDAGVDGEWRPEVTSGRCRVLSNC
Ga0307513_100318676	F052297	GAGG	MKKADTLAGRCPLESGVVTLESARRGELNGIGLEVSGWL
Ga0307513_100318677	F052297	GAGG	MKKADTLAGRCPLESGGVSLESARRGELNGIGLEASSCL
Ga0307513_100318678	F045459	N/A	MVNLSVCASIIPDGVETRSGVSSSVYPLTTMVTNYLALVLVEGSLTRWTEEGQSPLVGSVENPLCDCISYSVLPALHDLSSGSYL