Scaffold Ga0307513_10002178

Overview

Basic Information

• Taxon OID: 3300031456
• Scaffold ID: Ga0307513_10002178
• Source Dataset Name: Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27388
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (59.46%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Tuberaceae → Tuber → Tuber borchii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location

• Location Name: USA: Washington
• Coordinates
  • Lat. (^o): 45.9233
  • Long. (^o): -120.701

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038487	Metagenome	165	Y
F092968	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0307513_1000217836	F092968	AGGAG	MRESLVSEGIWTHGLGGGRRRDVKDAGVDREWRLDVMSGRHRVQSNG
Ga0307513_1000217837	F038487	GGAG	MAIDAEGVQISLCSVRKTKHPDSLPDARVELDSAMTREEQEGDRRDAGELSV