NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272425_1003519

Scaffold Ga0272425_1003519


Overview

Basic Information
Taxon OID3300031453 Open in IMG/M
Scaffold IDGa0272425_1003519 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - Pudding Butte sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)22983
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (19.23%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → leotiomyceta → Lecanoromycetes → OSLEUM clade → Umbilicariomycetidae → Umbilicariales → Umbilicariaceae → Lasallia → Lasallia pustulata(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-75.8Long. (o)159.9Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051591Metagenome143Y
F052973Metagenome141Y
F065269Metagenome127Y
F080688Metagenome114Y
F091080Metagenome107Y
F098340Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0272425_100351916F080688N/AMLQTLMTQAEMHXTTHSDVHXSSDFEDLHEKQIVESMTSQLSEHSIKVQLSDHL
Ga0272425_100351922F051591N/AMLDAIALYLMYRSSCIISLRIVTTDLDLLSCTSRKGKTDSELIRNIVLLXNNVVLCAIFECKRVQFRFLRQYAVFCAVLKSIDDLFFSCKFALRFINQVIVXIDDSFFCVDELSFCRRFXPAXARKISIFTFXLATQSSMKLLSRIRTCFDCTIVLYNLSIDLMYYMLLLSF
Ga0272425_10035194F065269N/AMTRSTELESKSVSIARYELQNAERESLLSQNQTASEEEDMNASLNIEEENTNALLFNHEMIKISISTELNA
Ga0272425_10035195F098340N/AMIEVAVYQTLVKNKKIKIFLLIINEINKALSLVEDFAKLNEMTSIMLLIELKKKFSIVYHDF
Ga0272425_10035196F091080N/AMIILCXFKXVINKFIISFLCSYIMIDVYKAHVINFXSKILLYNXINFDFDNNIDXISKHSHSFDIKDSSMKVMSMTSIFIKVRNLNIFSKLLKMISTVNDLKLNESSNMLMKQNISILFLITTLMKVNHFLNLQXSYALKSFQDIYMFYVLSSCIXSKVLSSITFSCXNQDSIF
Ga0272425_10035198F052973N/AMFKDCVKLERNVFVTEKECDVNEQDVDERKECXERKKDXVISESNLS
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