Scaffold Ga0272433_10011797

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10011797
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9285
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002864	Metagenome / Metatranscriptome	525	Y
F057109	Metagenome / Metatranscriptome	136	Y
F072038	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1001179710	F057109	AGGAGG	MGENPDHDREEVPGRPAVSPENTREQAREGREQRAEEGRGDLATRLRLFFRGLFGRR
Ga0272433_1001179711	F072038	GGTGG	LEGSVDEKSLRLLKAMREQLGEASASRTVDAVAAANSLGMDRGTLGFHRSLHELVRAGYLEEPASPALAPQGTYLITFEGIAAAEDA
Ga0272433_1001179712	F002864	AGG	VKEQGPVRIPKDVLEELKAVGRDTRTDMLDIPTLRYVASEAGKPALVVWIDGHAREYGRGLLDGFRAEE