Metagenome / Metatranscriptome Family F072038

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072038
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	84 residues
Representative Sequence	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLERGSLEFHRRLHDLVRAKYLEEPANPALSAQGKYLITFEGLAAADNH
Number of Associated Samples	60
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	78.15 %
% of genes near scaffold ends (potentially truncated)	22.31 %
% of genes from short scaffolds (< 2000 bps)	84.30 %
Associated GOLD sequencing projects	59
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.78

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (50.413 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (48.760 % of family members)
Environment Ontology (ENVO)	Unclassified (48.760 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (78.512 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 42.34% β-sheet: 8.11% Coil/Unstructured: 49.55%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.78
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.78
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SCOP family	SCOP domain	Representative PDB	TM-score
a.4.5.51: Heat-inducible transcription repressor HrcA, N-terminal domain	d1stza1	1stz	0.72657
a.4.5.0: automated matches	d4g9ya_	4g9y	0.72145
a.4.5.0: automated matches	d6pcoa_	6pco	0.71787
a.4.5.48: F93-like	d2pg4a1	2pg4	0.7138
a.4.5.0: automated matches	d4hqma_	4hqm	0.7108

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF06150	ChaB	2.48
PF13586	DDE_Tnp_1_2	2.48
PF07040	DUF1326	2.48
PF06348	DUF1059	2.48
PF05995	CDO_I	1.65
PF13340	DUF4096	1.65
PF08734	GYD	1.65
PF08447	PAS_3	1.65
PF01425	Amidase	1.65
PF13205	Big_5	1.65
PF13239	2TM	0.83
PF07992	Pyr_redox_2	0.83
PF00011	HSP20	0.83
PF03475	3-alpha	0.83
PF08713	DNA_alkylation	0.83
PF05974	DUF892	0.83
PF13563	2_5_RNA_ligase2	0.83
PF13384	HTH_23	0.83
PF02518	HATPase_c	0.83
PF07311	Dodecin	0.83
PF07366	SnoaL	0.83
PF00383	dCMP_cyt_deam_1	0.83
PF01710	HTH_Tnp_IS630	0.83
PF00353	HemolysinCabind	0.83
PF05239	PRC	0.83
PF00293	NUDIX	0.83
PF01152	Bac_globin	0.83
PF00582	Usp	0.83
PF02627	CMD	0.83
PF02604	PhdYeFM_antitox	0.83
PF00929	RNase_T	0.83
PF00072	Response_reg	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG4572	Cation transport regulator ChaB	Inorganic ion transport and metabolism [P]	2.48
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	2.48
COG0154	Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit or related amidase	Translation, ribosomal structure and biogenesis [J]	1.65
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	1.65
COG5553	Predicted metal-dependent enzyme of the double-stranded beta helix superfamily	General function prediction only [R]	1.65
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0599	Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase family	General function prediction only [R]	0.83
COG2128	Alkylhydroperoxidase family enzyme, contains CxxC motif	Inorganic ion transport and metabolism [P]	0.83
COG2161	Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family	Defense mechanisms [V]	0.83
COG2258	N-hydroxylaminopurine reductase YiiM, contains MOSC domain	Defense mechanisms [V]	0.83
COG2346	Truncated hemoglobin YjbI	Inorganic ion transport and metabolism [P]	0.83
COG3360	Flavin-binding protein dodecin	General function prediction only [R]	0.83
COG3415	CRISPR-associated protein Csa3, CARF domain	Defense mechanisms [V]	0.83
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.83
COG4118	Antitoxin component of toxin-antitoxin stability system, DNA-binding transcriptional repressor	Defense mechanisms [V]	0.83
COG4912	3-methyladenine DNA glycosylase AlkD	Replication, recombination and repair [L]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	51.24 %
Unclassified	root	N/A	48.76 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.41 %
Unclassified	root	N/A	48.76 %
Viruses	superkingdom	All Organisms → Viruses	0.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.41 %
Unclassified	root	N/A	48.76 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	36.36 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	32.23 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.65 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	24.79 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.83 %
Ktedonobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria	0.83 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	24.79 %
Ktedonobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales	0.83 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	24.79 %
Ktedonobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae	0.83 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	5.79 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	4.96 %
Ktedonobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter	0.83 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	48.76 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	5.79 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	4.96 %
Ktedonobacter racemifer	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	0.83 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.83 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.83 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2119805012\|FNTS067_GJ87FRN01APYS1	Not Available	546	Open in IMG/M
3300000095\|LCrCPGB2aDRAFT_c001919	All Organisms → cellular organisms → Bacteria	3506	Open in IMG/M
3300000436\|LCrCPGB2_illDRAFT_1001463	All Organisms → cellular organisms → Bacteria	4070	Open in IMG/M
3300000436\|LCrCPGB2_illDRAFT_1010778	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1825	Open in IMG/M
3300000750\|JGI12272J11983_1050020	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	681	Open in IMG/M
3300000833\|JGI12273J12029_10446158	Not Available	540	Open in IMG/M
3300004463\|Ga0063356_106309959	Not Available	508	Open in IMG/M
3300005562\|Ga0058697_10229213	Not Available	856	Open in IMG/M
3300006876\|Ga0079217_11351810	Not Available	553	Open in IMG/M
3300007004\|Ga0079218_10310126	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1288	Open in IMG/M
3300007004\|Ga0079218_12131063	Not Available	648	Open in IMG/M
3300007790\|Ga0105679_10302779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2276	Open in IMG/M
3300007790\|Ga0105679_10775352	Not Available	1075	Open in IMG/M
3300007790\|Ga0105679_11022389	Not Available	1045	Open in IMG/M
3300009789\|Ga0126307_10059106	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3006	Open in IMG/M
3300009789\|Ga0126307_10093799	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2374	Open in IMG/M
3300009789\|Ga0126307_10270591	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1366	Open in IMG/M
3300009789\|Ga0126307_10382901	All Organisms → cellular organisms → Bacteria	1134	Open in IMG/M
3300009789\|Ga0126307_10479207	Not Available	1004	Open in IMG/M
3300009789\|Ga0126307_10535944	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300009789\|Ga0126307_11660914	Not Available	519	Open in IMG/M
3300009840\|Ga0126313_10198118	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1540	Open in IMG/M
3300009840\|Ga0126313_10237030	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300009840\|Ga0126313_10246065	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1386	Open in IMG/M
3300009840\|Ga0126313_10533736	Not Available	942	Open in IMG/M
3300009840\|Ga0126313_10571086	Not Available	910	Open in IMG/M
3300009840\|Ga0126313_10634640	Not Available	862	Open in IMG/M
3300009840\|Ga0126313_10771906	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	781	Open in IMG/M
3300009840\|Ga0126313_11095448	Not Available	654	Open in IMG/M
3300009840\|Ga0126313_11569233	Not Available	548	Open in IMG/M
3300010036\|Ga0126305_10079088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1933	Open in IMG/M
3300010036\|Ga0126305_10234867	Not Available	1174	Open in IMG/M
3300010036\|Ga0126305_10533241	Not Available	785	Open in IMG/M
3300010036\|Ga0126305_10560323	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	766	Open in IMG/M
3300010037\|Ga0126304_10103016	Not Available	1807	Open in IMG/M
3300010037\|Ga0126304_10483863	Not Available	830	Open in IMG/M
3300010038\|Ga0126315_10030501	All Organisms → cellular organisms → Bacteria	2802	Open in IMG/M
3300010038\|Ga0126315_10081720	Not Available	1821	Open in IMG/M
3300010038\|Ga0126315_10144250	Not Available	1405	Open in IMG/M
3300010038\|Ga0126315_10272754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1037	Open in IMG/M
3300010039\|Ga0126309_10036242	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2282	Open in IMG/M
3300010039\|Ga0126309_10247111	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1009	Open in IMG/M
3300010039\|Ga0126309_10291485	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	940	Open in IMG/M
3300010039\|Ga0126309_10390754	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	830	Open in IMG/M
3300010039\|Ga0126309_10413935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	810	Open in IMG/M
3300010039\|Ga0126309_10482717	All Organisms → cellular organisms → Bacteria	759	Open in IMG/M
3300010039\|Ga0126309_10491870	Not Available	753	Open in IMG/M
3300010039\|Ga0126309_10923404	Not Available	580	Open in IMG/M
3300010040\|Ga0126308_10091502	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1848	Open in IMG/M
3300010040\|Ga0126308_10377616	Not Available	942	Open in IMG/M
3300010040\|Ga0126308_10657835	Not Available	718	Open in IMG/M
3300010041\|Ga0126312_10293455	Not Available	1146	Open in IMG/M
3300010041\|Ga0126312_10380779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1002	Open in IMG/M
3300010041\|Ga0126312_11280005	Not Available	542	Open in IMG/M
3300010041\|Ga0126312_11444208	Not Available	510	Open in IMG/M
3300010042\|Ga0126314_10085700	All Organisms → cellular organisms → Bacteria	2119	Open in IMG/M
3300010042\|Ga0126314_10198844	All Organisms → cellular organisms → Bacteria	1411	Open in IMG/M
3300010042\|Ga0126314_10677650	Not Available	755	Open in IMG/M
3300010044\|Ga0126310_10012462	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	4008	Open in IMG/M
3300010044\|Ga0126310_10076995	All Organisms → Viruses → Predicted Viral	1951	Open in IMG/M
3300010044\|Ga0126310_10303977	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1100	Open in IMG/M
3300010044\|Ga0126310_10341564	Not Available	1046	Open in IMG/M
3300010044\|Ga0126310_10504849	Not Available	884	Open in IMG/M
3300010044\|Ga0126310_10816164	Not Available	719	Open in IMG/M
3300010044\|Ga0126310_11473351	Not Available	557	Open in IMG/M
3300010044\|Ga0126310_11510572	Not Available	551	Open in IMG/M
3300010044\|Ga0126310_11846100	Not Available	504	Open in IMG/M
3300010045\|Ga0126311_10240028	All Organisms → cellular organisms → Bacteria	1340	Open in IMG/M
3300010045\|Ga0126311_10295922	Not Available	1217	Open in IMG/M
3300010166\|Ga0126306_10060051	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2656	Open in IMG/M
3300010166\|Ga0126306_10076988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	2369	Open in IMG/M
3300010166\|Ga0126306_10328934	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1182	Open in IMG/M
3300012045\|Ga0136623_10318063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	660	Open in IMG/M
3300012185\|Ga0136619_10042253	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1765	Open in IMG/M
3300012529\|Ga0136630_1073646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1268	Open in IMG/M
3300012531\|Ga0136640_10023935	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2700	Open in IMG/M
3300012684\|Ga0136614_11158151	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	526	Open in IMG/M
3300012939\|Ga0162650_100003582	All Organisms → cellular organisms → Bacteria	1707	Open in IMG/M
3300012941\|Ga0162652_100090502	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300014487\|Ga0182000_10017501	All Organisms → cellular organisms → Bacteria	1851	Open in IMG/M
3300018432\|Ga0190275_10037113	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3966	Open in IMG/M
3300018432\|Ga0190275_10275548	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1636	Open in IMG/M
3300018432\|Ga0190275_11127246	Not Available	858	Open in IMG/M
3300018465\|Ga0190269_11028717	Not Available	626	Open in IMG/M
3300018466\|Ga0190268_10321962	Not Available	943	Open in IMG/M
3300018466\|Ga0190268_10662605	Not Available	756	Open in IMG/M
3300018469\|Ga0190270_10567035	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	1099	Open in IMG/M
3300018719\|Ga0193596_1038395	Not Available	703	Open in IMG/M
3300018757\|Ga0193612_1090710	Not Available	502	Open in IMG/M
3300018839\|Ga0193606_1077463	Not Available	750	Open in IMG/M
3300018875\|Ga0193608_1004053	All Organisms → cellular organisms → Bacteria → Terrabacteria group	2956	Open in IMG/M
3300018877\|Ga0193600_1154178	Not Available	514	Open in IMG/M
3300018890\|Ga0193595_1110239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	798	Open in IMG/M
3300018890\|Ga0193595_1175455	Not Available	560	Open in IMG/M
3300018891\|Ga0193610_1066178	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	968	Open in IMG/M
3300018894\|Ga0193603_1118018	Not Available	645	Open in IMG/M
3300018906\|Ga0193609_1160344	Not Available	609	Open in IMG/M
3300018914\|Ga0193594_1043244	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1132	Open in IMG/M
3300018915\|Ga0193591_1157326	Not Available	671	Open in IMG/M
3300018916\|Ga0193615_1118418	Not Available	689	Open in IMG/M
3300018917\|Ga0193611_1029750	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1749	Open in IMG/M
3300018917\|Ga0193611_1073434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	955	Open in IMG/M
3300018918\|Ga0193616_1194463	Not Available	539	Open in IMG/M
3300018920\|Ga0190273_10206200	All Organisms → cellular organisms → Bacteria	1235	Open in IMG/M
3300018920\|Ga0190273_10280204	Not Available	1101	Open in IMG/M
3300018933\|Ga0193614_1023696	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1763	Open in IMG/M
3300018939\|Ga0193593_1011470	All Organisms → cellular organisms → Bacteria	2154	Open in IMG/M
3300018984\|Ga0193605_1046195	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1343	Open in IMG/M
3300019142\|Ga0193597_1043872	All Organisms → cellular organisms → Bacteria	1497	Open in IMG/M
3300019377\|Ga0190264_10990233	Not Available	670	Open in IMG/M
3300019377\|Ga0190264_11390893	Not Available	600	Open in IMG/M
3300019377\|Ga0190264_11733700	Not Available	558	Open in IMG/M
3300024430\|Ga0196962_10007896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	3239	Open in IMG/M
3300030510\|Ga0268243_1051059	Not Available	895	Open in IMG/M
3300030510\|Ga0268243_1092686	Not Available	695	Open in IMG/M
3300031450\|Ga0272433_10011797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	9285	Open in IMG/M
3300031824\|Ga0307413_10151005	Not Available	1619	Open in IMG/M
3300031901\|Ga0307406_11401695	All Organisms → cellular organisms → Bacteria → Terrabacteria group	613	Open in IMG/M
3300031903\|Ga0307407_10224240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Ktedonobacteria → Ktedonobacterales → Ktedonobacteraceae → Ktedonobacter → Ktedonobacter racemifer	1273	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.87%
Host-Associated	Host-Associated	4.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.74%
Aquatic	Environmental → Aquatic	4.13%
Plants	Host-Associated → Plants	4.13%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.26%
Freshwater	Environmental → Aquatic → Freshwater	4.13%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.48%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	1.65%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%
Phylloplane	Host-Associated → Plants → Phylloplane	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	63.64%
Sand	Environmental → Terrestrial → Soil → Sand	25.62%
Ice	Environmental → Aquatic → Freshwater → Ice	4.13%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	61.16%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	25.62%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	4.13%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	2.48%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.48%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	48.76%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	22.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.92%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	4.13%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.48%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.48%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	1.65%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.83%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	0.83%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2119805012	Soil microbial communities from sample at FACE Site NTS_067 Nevada Test Site	Environmental	Open in IMG/M
3300000095	Soil microbial communities from Colorado Plateau, Green Butte sample - Light Crust, Colorado Plateau, Green Butte 2	Environmental	Open in IMG/M
3300000436	Soil microbial communities from Colorado Plateau, Greene Butte sample - Light Crust, Colorado Plateau, Green Butte	Environmental	Open in IMG/M
3300000750	Soil microbial communities from Moab, Utah, sample - Soil Crust Dry out, 3 days (biological replicate A) D5A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300000833	Soil microbial communities from Moab, Utah, sample - Soil Crust Prior wet up (biological replicate C) 0C (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012045	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ449 (21.06)	Environmental	Open in IMG/M
3300012185	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ353 (21.06)	Environmental	Open in IMG/M
3300012529	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ568 (21.06)	Environmental	Open in IMG/M
3300012531	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ864 (21.06)	Environmental	Open in IMG/M
3300012684	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ279 (21.06)	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018719	Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 49.5 hrs after wetting v1	Environmental	Open in IMG/M
3300018757	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 42 hrs after wetting v1	Environmental	Open in IMG/M
3300018839	Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300018875	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 49.5 hrs after wetting v1	Environmental	Open in IMG/M
3300018877	Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 42 hrs after wetting v1	Environmental	Open in IMG/M
3300018890	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, bundles v1	Environmental	Open in IMG/M
3300018891	Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300018894	Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, bundles v1	Environmental	Open in IMG/M
3300018906	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 3 min after wetting v1	Environmental	Open in IMG/M
3300018914	Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 42 hrs after wetting v1	Environmental	Open in IMG/M
3300018915	Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300018916	Soil crust microbial communities from Colorado Plateau, Utah, USA - late stage, bundles v1	Environmental	Open in IMG/M
3300018917	Soil crust microbial communities from Colorado Plateau, Utah, USA - early-mid stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300018918	Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300018933	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 42 hrs v1	Environmental	Open in IMG/M
3300018939	Soil crust microbial communities from Colorado Plateau, Utah, USA - midlate stage, 9 hrs after wetting v1	Environmental	Open in IMG/M
3300018984	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 9 hrs after wetting v1	Environmental	Open in IMG/M
3300019142	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid late stage, 3 min after wetting v1	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300024430	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300031450	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud	Environmental	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031901	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2	Host-Associated	Open in IMG/M
3300031903	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FNTS067_06943120	2119805012	Soil	MTLMDDETMQLLKAMRKQLGKTSADRTVDAWAAANSLGMDRASLDFDRSLHDLVGADYLEEPANPALRAQGKYLITFQGIAASDNA
LCrCPGB2aDRAFT_0019194	3300000095	Soil	LDDKTMRLLKALREQLGETSASRTVDAAAAANSLGMDRGTLDFHRSLHDLVRDDYLEEPPNPALRGQGKYLITFEGIAAADNH*
LCrCPGB2_illDRAFT_10014635	3300000436	Soil	LDDKTMRLLKALREQLGETSASRTVDAAAAANSLGMDRGTLDFHRSLHDLVRADYLEEPPNPALRGQGKYLITFEGIAAADNH*
LCrCPGB2_illDRAFT_10107782	3300000436	Soil	MDDETMQLLKAMREQLGKTSATRTVDALAAANTLGLEGRSLDFDRRLQDLVVAEYLEEPANPALMAQGKYLITFEGLAAADNY*
JGI12272J11983_10500202	3300000750	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGGSLDFDRRLQDLVVAEYLEEPANPALVAQGKYL
JGI12273J12029_104461581	3300000833	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGGSLDFDRRLQDLVVAEYLEEPANPALMAQGKYLITFEGLAAADNY*
Ga0063356_1063099591	3300004463	Arabidopsis Thaliana Rhizosphere	MDDETMQLLKVLREQLGKTSAIRTVDALVAANSRSLESGSLDFHRCLHDLVRAKYLAEPADPGLSAQGKYWITFEGLAAADNH*
Ga0058697_102292131	3300005562	Agave	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLERGSLEFHRRLHDLIQAKLLEEPANHALSAQGKYSITFEGLAAADNH*
Ga0079217_113518102	3300006876	Agricultural Soil	MDDETMQLLKVVREQLGKTSASRSVDALAAANSLGLEKSSLEFHRRLHDLLRAKYLEEPANPALSAQGKYLITFDGLAAADNH*
Ga0079218_103101262	3300007004	Agricultural Soil	MQLLRAMREQLGMTSAGRGVDAVAAANSLGMDRGTLEFHRSLHDLVRADYLEEPANPALRAQGKYLITFEGIAAADNY*
Ga0079218_121310631	3300007004	Agricultural Soil	MDDETMQLLKVLREQLGKTSASRTMDALAAANSLGLERSSLEFYRRLHDLVRAKYLEEPANPALSAQGKYLITFEGLAAADNH*
Ga0105679_103027792	3300007790	Soil	MLLLKAMREQLGKTSAGRSVDAVAAANSLGMDRGALDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGIAAADNY*
Ga0105679_107753521	3300007790	Soil	MNDESMQLLKVLREQLGKSSASRSVHALGAANSLGLERDSLEFHRRLHDLVRAKYLEKPANPALSAQGKYLITFEG
Ga0105679_110223892	3300007790	Soil	MDDETMQLLKVLREQLGKSSPSRSVDALAAANSLGLERDSLEFHRRLHDLLRANYLEEPANPALSGQGKYLITFEGLAAADNH*
Ga0126307_100591063	3300009789	Serpentine Soil	MDDETMQLLNALREQLGKSSASRSVDALAAANSLGLERDSLEFHRRLHDLLRAKHLEEAANPAQSGQGKYLITFEGIAAADNH*
Ga0126307_100937992	3300009789	Serpentine Soil	LKALREQLGKISASRSVDTLGGANSLGMERGSLEFHRRLHDLVQAKYLEEAANPALRAQGKYLITFEGLTAADDH*
Ga0126307_102705912	3300009789	Serpentine Soil	VYPDGIEYPEGALMDDETMRLLKVLREQLGKTSASRSVDALAAANSLGLERSSLKFHRRLHDLVRAKYLEKPANPALSAQGKYLITFEGIAAADNH*
Ga0126307_103829011	3300009789	Serpentine Soil	MREQLGKTSAGRSVDAVAAANSLGMDRDSLDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGITVADNY*
Ga0126307_104792071	3300009789	Serpentine Soil	MQLLKTMREQLGKTSAGRSVDAVAAANSLGMDRGALDFHRSLHDLVRADYLEEPANPALRAQGKYLITFEGITAADNY*
Ga0126307_105359442	3300009789	Serpentine Soil	MDDETMLLLKVLREQLGKTSASRSVDALAAANSLGLERGSLEFHRRLHDLVRAKYLEEPANPVLSAQGAYLITFEGLAAAENH*
Ga0126307_116609141	3300009789	Serpentine Soil	LKAMREQLGKTSAGRSVDAVAAANSLGMDRGALDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGIAAADNY*
Ga0126313_101981183	3300009840	Serpentine Soil	MLVLKAMREQLGKTSAGRSVDAVAAANSLGMDRGALDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGIAAADNY*
Ga0126313_102370303	3300009840	Serpentine Soil	VYPDGIEYPEGALMDDETMQLLKVFREQLGETSASRSVDALAAANSLGLERGSLEFHRRLHDLVWAKYLEEPANPALSAQGKYLVTFEGLAAADNH*
Ga0126313_102460652	3300009840	Serpentine Soil	MDDEIMQLLKATREQLGKASASRSVDAVAAANTLGLDRGTLDFHRRLHDLVCGEYLEEPANPALRAQGMYLITFEGIAAADNY*
Ga0126313_105337362	3300009840	Serpentine Soil	MDDETMQLLKVLREQLGKSSASRSVDALAAANSLGLESGSLEFHRRLHDLLRAKYLEEAANPALSAQGKYLITFEGLAAADNH*
Ga0126313_105710861	3300009840	Serpentine Soil	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLERGSLEFHRRLHDLVRAKYLEEPANPALSAQGKYLITFEGLAAADNH*
Ga0126313_106346402	3300009840	Serpentine Soil	VASNIQRVLMNDETMQLLKALREQLGKISASRSVDTLGGANSLGMERGSLEFHRRLHDLVQAKYLEEAANPALRAQGKYLITFEGLAATDDH*
Ga0126313_107719062	3300009840	Serpentine Soil	LKVLREQLGKSSASRSVDALGAANSLALESGSLEFHRRLHDLVRAKYLEEPANPALSAQGKYLITFEGLAAADNH*
Ga0126313_110954481	3300009840	Serpentine Soil	MQLLKTMREQLGKTSAGRSVDAVAAANSLGMDRDALDFHRSLHDLVRADYLEEPANPALRAQGKY
Ga0126313_115692331	3300009840	Serpentine Soil	MQVLKAMREQLGKTSAGRSVDAVAAANSLGMDKGALDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGIAVADNY*
Ga0126305_100790882	3300010036	Serpentine Soil	MDDETMQLLKVMRAQLGKTSASRSVDAVAAANTLGLDRGTLDFHRSMRDLLRAEYLEKPADPALRVQGKYLITFEGIAAADND*
Ga0126305_102348671	3300010036	Serpentine Soil	MQLLKVLREQLGKTSASRSVDALAAANSLGLERGSLKFHRRLHDLLRAKYLGEAANPALSAQGKYLITFEGLAAADNH*
Ga0126305_105332412	3300010036	Serpentine Soil	MREQLGKTSAGRSVDAVAAANSLGMDRDALDFHRSLHDLVRADYLEEPANPALRAQGKYFLTFEGIAVADNY*
Ga0126305_105603232	3300010036	Serpentine Soil	MDDETMQLLKVLRAQLGKTSASRRVDALAAANSLGLERGSLEFHRRLHDLLRAKYLEEPANPALSAQGKYLITFEGLAAADND*
Ga0126304_101030165	3300010037	Serpentine Soil	MDDETMQLLKVMRAQLGKTSASRSVDAVAAANTLGLDRGTLDFHRSMRDLLRAEYLEKPADPALRAQGKYLITFEGIAAADND*
Ga0126304_104838631	3300010037	Serpentine Soil	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLESGSLEFHRRLHDLVRAKYLEEAANPALSAQGMYLITFEGLAAADNH*
Ga0126315_100305013	3300010038	Serpentine Soil	MQVLKAMREQLGKTSAGRSVDAVAAANSLGMDKGALDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGIAAADNY*
Ga0126315_100817202	3300010038	Serpentine Soil	MYPSGIEYPEGALMDDETMQLLKVLREQLGKSSASRSVDALGAANSLGLESGSLEFHRRLHDLVRAKYLEEPANPALSAQGKYLITFEGLAAADNH*
Ga0126315_101442502	3300010038	Serpentine Soil	VASNIQRVLMNDETMQLLKALREQLGKSSASRSVDALGGANFLGLERGSLEFHCRLHDLVQAKYLEKPANPALSGQRKYLITFEGLAAADNH*
Ga0126315_102727542	3300010038	Serpentine Soil	LMDDESMQLLKVFREQLGETSASRSVDALAAANSLGLERGSLEFHRRLHDLVWAKYLEEPANPALSAQGKYLVTFEGLAAADNH*
Ga0126309_100362424	3300010039	Serpentine Soil	MQLLKAMREQLGKTSAGRSVDAVAAANSLGMDRGALDFHRSLHDLVRADYLEEPANPALRAQRKYLITFEGIAAADNY*
Ga0126309_102471112	3300010039	Serpentine Soil	VDGESLRLLKALRGQLGEASASRAVDAAVAAKCLSMDGGTLDFHRRLHDLVRAGYLEEPASPARAPRGTYLITFEGITVADDT*
Ga0126309_102914852	3300010039	Serpentine Soil	MDDETMQLLKVLREQLGKSSASRSVDALAAANSLGLERDSLEFHRRLHDLLRAKYLEEASNPPQSGQGKYLITFEGIAAADNH*
Ga0126309_103907542	3300010039	Serpentine Soil	MDDETMQLLKVMREQLGKTSASRSVDAVAAANTLGLDRGTLGFHRSMRDLLRGEYLEEPADPALRAQGKYLITFEGIAAADTD*
Ga0126309_104139352	3300010039	Serpentine Soil	VDEESLRLLKAMRGQLGGASASRAVDAAVAAKVLGMDRGTLDFHRRLHDLVRAGYLEEPASPARAPRGTYLITFEGIAAADDA*
Ga0126309_104827171	3300010039	Serpentine Soil	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLESGSLEFHRRLHDLLRAKHLEEPTNPALSAQGKYLITLEGLAAADNH*
Ga0126309_104918701	3300010039	Serpentine Soil	VASNIQRVLMNDETMQLLKALREQLGKISASRSVDTLGGANSLGMERGSLEFHRRLHELVQAKYLEEAANPALRGQGKYLITFEGLAAADDH*
Ga0126309_109234041	3300010039	Serpentine Soil	MQLLKAMREQLGQTSAGRSVDAVAAANSLGMDRDALNFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGIAEADNY*
Ga0126308_100915022	3300010040	Serpentine Soil	MYPSGIEYPEGALMDDETMQLLKVLREQLGKSSASRSVDALGAANSLGLERGSLEFHRRLHDLVRAKYLEEPANPALSAQGSI*
Ga0126308_103776162	3300010040	Serpentine Soil	MNDETMQLLKALREQLGKSSASRSVDALGGANSLGLERGSLEFHRRLHDLVQAKYLEKPANPALSGQGKYLITFEGLAVADNH*
Ga0126308_106578351	3300010040	Serpentine Soil	MGDETMQLLKVLREQLGKTSASRSVDALAAANSLGLERGYLDFHRRLHDLVRAKYLEEPANPALSAQGKYLITFEGLAVADNH*
Ga0126312_102934552	3300010041	Serpentine Soil	MDDETMQQLKVLREQLGKTSASRSVDALAAANSLGLESGSLEFHRRLHDLVRAKYLEEAANPALSAQGMYLITFEGLAAADNH*
Ga0126312_103807791	3300010041	Serpentine Soil	RRTCTLVASNIQRVLMNDETMQLLKALREQLGKTSASRSVDAQGGANALGLERGSLEFHRRLHGLVQAKYLEKPANPALSGQGKYLITFEGLAAADNH*
Ga0126312_112800051	3300010041	Serpentine Soil	MDDESMQLLKVFREQLGETSASRSVDALAAANSLGLERGSLEFHRRLHDLVRVKYLEKPANPALSAQGKYLITFEGLAADNH*
Ga0126312_114442081	3300010041	Serpentine Soil	MDDETMQLLKVLRAQLGKTSASRSVEALTAANSLGLERGSLEFHRRLHDLLRAKYLEEAANPALSAQGKYLITFEGLAATDNH*
Ga0126314_100857003	3300010042	Serpentine Soil	MYPGGIEYPEGALMDDETMQLLKVLREQLGKSSASRSVDALGAANSLGLESGSLEFHRRLHDLVRAKYLEEPANPALSAQGKYLITFEGLAAADNH*
Ga0126314_101988442	3300010042	Serpentine Soil	VYPDGIEYPEGALMDDETMQLLKVFREQLGETSASRSVDALAAANSLGLERGSLEFHRRLHDLVWVKYLEEPANPALSAQGKYLVTFEGLAAADNH*
Ga0126314_102672982	3300010042	Serpentine Soil	MPKEMLMNKSEVDQRPLFTQVRRALMNVMNDETMQLLKATREQLGKASASRSVDAVAAANTLGLDRDTLEFHRRLHDLVRGEYLEEPANPALRAQGMYLITFEGIAAADNY*
Ga0126314_106776501	3300010042	Serpentine Soil	QNVYPGGIEYPEDALMDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLERGSLKFHRRLHDLLRAKYLGEAANPALSAQGKYLITFEGLAAADNH*
Ga0126310_100124624	3300010044	Serpentine Soil	MKVMNDETMQLLKATREQLGKASASRSVDAAAAANTLGLDRGTLDFHRRLHDLVRGEYLEEPANPALRAQGMYLITFEGIAAADNY*
Ga0126310_100769952	3300010044	Serpentine Soil	MDDETMQLLKIMRQQLGTTSASRSVYAVAAANTLGMDRGTLEFHRRLHDLLRADYLEEPANPALRAQGMYLITFEGIAAADNY*
Ga0126310_103039771	3300010044	Serpentine Soil	ALMDDETMQLLKVLREQLGKTSASRSVDALTAANSLGLERGSVEFHRRLHDLLRAKYLEEPANPALSAQGKYLITFEGLAAADNH*
Ga0126310_103415641	3300010044	Serpentine Soil	MQLLKTMREQLGKTSAGRSVDAVAAANSLGMDRGALDFHRSLHDLVRADYLEEPANPALRAQGKYLITFEDITAADNY*
Ga0126310_105048491	3300010044	Serpentine Soil	VASNIQRVLMNDETMQLLKALREQLGKISASRSVDTLGGANSLGMERGSLEFRRRLHELVQAKYLEEAANPALRAQGKYLITFEGLAAADDH*
Ga0126310_108161642	3300010044	Serpentine Soil	MEYPEDALMDDETMQLLKVLREQLGKTSASRSVDALTAANSLGLERGSLEFHRRLHDLLRAKYLEEPANPALSAQGKYLITFEGLAAADNH*
Ga0126310_114733512	3300010044	Serpentine Soil	MDDETMQLLKVLREQLGKTSASRSVDALGAANSLGLERGSLEFHRRLHDLVQAKYLEKPANPALSGQGKYLITFEGLAAADNH*
Ga0126310_115105721	3300010044	Serpentine Soil	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLERGYLDFHRRLHDLVRAKYLEEPANPALSAQGKYLITFEGLAAADNH*
Ga0126310_118461001	3300010044	Serpentine Soil	VASNIQRALMNEETMQLLKALRGQLGKTSASRSVDTLGGANSLGMERGSLEFHRRLHDLVQAQYLEEVANPALRAQGK
Ga0126311_102400281	3300010045	Serpentine Soil	MNDETMQLLKALREQLGKISASRSVDTLGGANSLGMERGSLEFHRRLHDLVQAKYLEEAANPALRAQGKYLITFEGLAATDDH*
Ga0126311_102959221	3300010045	Serpentine Soil	MQVLKAMREQLGKTSAGRSVDAVAAANSLGMDRGALDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGIAAADNY*
Ga0126306_100600512	3300010166	Serpentine Soil	VASNIQRVLMNDETMQLLKALREQLGKISASRSVDTLGGANSVGMERGSLEFHRRLHELVQAKYLEEAANPALRAQGKYLITFEGLAAADDH*
Ga0126306_100769881	3300010166	Serpentine Soil	MDDETMQLLKVMRAQLGKTSASRSVDAVAAANTLGLDRGTLNFHRSMRDLLRAEYLEKPADPTLRVQGKYLITFEGIAAADND*
Ga0126306_103289342	3300010166	Serpentine Soil	MQLLKAMREQLGKTSAGRSVDAVAAANSLGMDRGTLEFHRSLHDLVRTGYLEEPANPALRAQGKYLITFEGIAAADNY*
Ga0136623_103180631	3300012045	Polar Desert Sand	VDEKSLRLLKAMREQLGEASASRTVDAVAAANSLGMERGTLGFHRSLHELVRAGYLEEPASPALAPQGTYLITFEGIAAAEDA*
Ga0136619_100422531	3300012185	Polar Desert Sand	VDEKSLRLLKAMREQLGEASASRTVDAVAAANSLGMERGTLGFHRSLHELVRAGYLEGPANPALAPQGTYLITFEGIAAAEDA*
Ga0136630_10736464	3300012529	Polar Desert Sand	VDEKSLRLLKAMREQLGEASASRTVDAVAAANSLGMERGTLGFHRSLHELVRAGYLEEPASPALAPQGTYLITFEGIA
Ga0136640_100239354	3300012531	Polar Desert Sand	VDEKSLRILKAMREQLGEASASRTVDAVAAANSLGMDRGTLGFHRSLHELVRAGYLEEPASPPLAPQGTYLITFEGIAAAEDA*
Ga0136614_111581512	3300012684	Polar Desert Sand	MRLLKAMREQLGETSASRTVDAAAAANSLGTDRGTLDFHRSLHDLVRDYYLEEPPNPALRAQGKYLITFQGIAAADNH*
Ga0162650_1000035822	3300012939	Soil	MDDETIQLLKVLREQPGKTSASRSVDALAAANSLGLESGSLEFHRRLHDLIQAKYLEEPANPALSAQGKYLITFEGLAVADNISTAPRLL*
Ga0162652_1000905021	3300012941	Soil	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLESGSLEFHRRLHDLIQAKYLEEPANPALSAQGKYLITFEG
Ga0182000_100175012	3300014487	Soil	MDDETMQLLKVLREQLGKSSASRSVDALAAANSLGLERGSLEFHRRLHDLIQAKLLEEPANHALSAQGKYSITFEGLAAADNH*
Ga0190275_100371131	3300018432	Soil	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLESVSLKFHRRLHDLLRAKYLEEPANPGLSAQGKYLITFEGLAAADNH
Ga0190275_102755483	3300018432	Soil	VDEESLRLLKAMRGQLGEASASRVVDAAVAAKGLGMDRGTLDFHRRLHDLVLAGYLEEPSSSARATRGAYLITFEGIAAADDA
Ga0190275_111272461	3300018432	Soil	MEEGALMDDETMQLLKVLREQLGQTSANRTVDALAAANSLGLKRDSLEFHRRLHDLLRAEYLEEAANAALRAQGKYLITFEGIAAADNY
Ga0190269_110287171	3300018465	Soil	MDDETMQLLKVLREQLGKTSASRSVDARAAANSLGLERDSLEFHRRLHDLLRAKYLEEPANPALSAQGKYLITFEGLAAADNH
Ga0190268_103219622	3300018466	Soil	VDDKAMQLLKAMREQLGKTSAGRSVDAVAAANSLGMDRSALDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGITAADNY
Ga0190268_106626051	3300018466	Soil	MDDETMQLLKALRAQLGKTSASRSVDALAAANSLGLESGSLEFHRRLHDLIQAKLLEEPANHALSAQGKYSITFEGLAAADNH
Ga0190270_105670352	3300018469	Soil	QLGKTSASRSVDALAAANSLGLERGSLEFHRRLHDLIQAKYLEEPANPALSAQGKYLITFEGLAAADDH
Ga0193596_10383951	3300018719	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGGSLDFDRRLQDLVVAEYLEEPANPALVAQGKYLITFEGLAAADNY
Ga0193596_10577161	3300018719	Soil	HTTHARHRACTLVATNIRRTLMDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLERGSLDFDRRLQDLVGAYYLEEPANPALRAQGKYLITFEGIAAADNA
Ga0193612_10907101	3300018757	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGGSLDFDRRLQDLVVAEYLEEPANPALMAQGKYLITFEGLAAADNY
Ga0193606_10774631	3300018839	Soil	MDDDTMQLLTVMREQLGKTSASRSVDAVAAANSLGMDRASLDFHRSLHDLVEADYLEEPANPALRAQGKYLITFEGIAAADNA
Ga0193608_10040531	3300018875	Soil	CTLRASDIRRALMDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGRSLDFDRRLQDLVVAEYLEEPANPALMAQGKYLITFEGLAAADNY
Ga0193600_11541782	3300018877	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGGSLDFDRRLQDLVVAEYLEEPANPALMAQGKYLITFEGLAAA
Ga0193595_11102392	3300018890	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGGSLDFDRRLQDLVVAEYLEEPANPALVAQGKYLITFEGLAAA
Ga0193595_11754551	3300018890	Soil	VASNVVGRSILDDKTMRLLKAMREQLGEASASRTVDAAAAANSLGTDRGTLDFHRSLHDLVRADYLEEPPTPVLRAQGKYLITFEGIAAADNH
Ga0193610_10661782	3300018891	Soil	MREQLGETSASRTVDAAAAANSLGMDRGTLDFHRSLHDLVRADYLEEPPNHALRGQGKYLITFEGIAAADNH
Ga0193603_11180181	3300018894	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGRSLDFDRRLQDLVVAEYLEEPANPALMAQGKYLITFEGLAAADNY
Ga0193609_11603441	3300018906	Soil	LDDKTVRLLKAMREQLGETSASRTVDAAAAANSLGTDRGTLDFHRSLHDLVRADYLEEPPNHALRGQGKY
Ga0193594_10432441	3300018914	Soil	VASNVVGRSILDDKTMRLLKALREQLGETSASRTVDAAAAANSLGMDRGTLDFHRSLHDLVRADYLEEPPNHALRGQGKYLITFEGIAAADNH
Ga0193591_11573261	3300018915	Soil	VATNIRRTLMDDETMQLLKVMREQLGKTSASRTVDALAAANTLGLERGSLDFDRRLQDLVGAYYLEEPANPALRAQGKYLITFEGIAAADNA
Ga0193615_11184181	3300018916	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGRSLDFDRRLQDLVVAEYLEEPANPALVAQGKYLITFEGLAAADNY
Ga0193611_10297503	3300018917	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGRSLDFDRRLQDLVVAEYLEEPANPALMAQGKYL
Ga0193611_10734343	3300018917	Soil	MDDETMQLLKAMREQLGKTSASRTVDALAAANTLGLEGGSLDFDRRLQDLVVAEYLEEPANPALMAQGKYL
Ga0193616_11944631	3300018918	Soil	NSRKFACTEFSKVHTACTLVASNIRRALMDDETMQLLKAMREQLGKTSASRSVDAWAAANTLGLDRTSLDFQRSLHDLVGADYLEEPANPALRAQGKYLITFEGIAAADNH
Ga0190273_102062002	3300018920	Soil	MDEETMQLLKAMRGQLGKTSAGRSVDAVAAANTLGMDRGTLDFHRSLHVLVRADYLEEPANPALRAQGTYLITFEGIAAADNH
Ga0190273_102802041	3300018920	Soil	MDDETMRLLKVLREQLGKTSASRSVDALAAANSRGLESGSLEFHRRLHDLVRAKYLEKPANPAQSAQGKYLITFEGIAAADNH
Ga0193614_10236962	3300018933	Soil	VDEESLRLLKAMRGQLGEASASCAVDAAVAANSLGMDMGTLDFHRSLHDLVGAGYIEDPASPAWATRSTYLITFESIAAADDA
Ga0193593_10114704	3300018939	Soil	MQLLKAMREQLGKTSASRTVDAVAAANSLGMDRGTLDFHRSMHDLIRADYLEEPTNPALKAQGMYLITFDGIAVADNY
Ga0193605_10461952	3300018984	Soil	LNDKTMRLLKALREQLGETSASRTVDAADAANSLGMDRGTLDFHRSLHDLVRADYLEEPPNHALRGQGKYLITFEGIAAADNH
Ga0193597_10438722	3300019142	Soil	VASNVVGRSILDDKTMRLLKAMREQLGETSASRTVDAAAAANSLGTDRGTLDFHRSLHDLVRADYLEEPPTPVLRAQGKYLITFEGIAAADNH
Ga0190264_109902331	3300019377	Soil	MDDGTMQLLKAMREQLGKTSASRTVDALAAANTLGLEGGSLDFDRRLQDLVGAEYLEEPANHALIARGKYLITFEGIAAADNY
Ga0190264_113908931	3300019377	Soil	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLERGSLEFHRRLHDLIQAKYLEEPANSALSAQGKYLITFEGLAAADNH
Ga0190264_117337001	3300019377	Soil	VDHKTMQLLKAMRGQLGKTSPSRSVDAVAAANSLGMDRNTLDFHRSLHDLVRADYLEEPPNPALRAQGKYLITFE
Ga0196962_100078962	3300024430	Soil	MDDETMQLLKVLREQLGESSPSRSVDALAAANSLGLERDSLEFHRRLHDLLRANYLEDPANPAQSGQGKYLITFKGIAAADNH
Ga0268243_10510592	3300030510	Soil	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLERGSLEFHRRLHDLIQAKLLEEPANHALSAQGKYSITFEGLAAADNH
Ga0268243_10926861	3300030510	Soil	VDDKAMLVLKAMREQLGKTSAGRSVDAVAAANSLGMDRGALDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGIAAADNY
Ga0272433_1001179711	3300031450	Rock	LEGSVDEKSLRLLKAMREQLGEASASRTVDAVAAANSLGMDRGTLGFHRSLHELVRAGYLEEPASPALAPQGTYLITFEGIAAAEDA
Ga0307413_101510051	3300031824	Rhizosphere	MLVLKAMREQLGKTSAGRSVDAVAAANSLGMDRGALDFHRSLHDLVRADYLEEPANPALRAQGKYLLTFEGIAAADNY
Ga0307406_114016951	3300031901	Rhizosphere	SPQNMYPSGIEYPEGALMDDETMQLLKVLREQLGKTSASRSVNALAAANSLGLESGSLEFHRRLHDLVQAKYLEEPANPALSAQGKYLITFEGLAAADNH
Ga0307407_102242403	3300031903	Rhizosphere	MDDETMQLLKVLREQLGKTSASRSVDALAAANSLGLESGSLEFHRRLHDLVRAKYLEEAANPALSAQGKYLITFEGLAAADNH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072038

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences