Scaffold Ga0272433_10001222

Overview

Basic Information

• Taxon OID: 3300031450
• Scaffold ID: Ga0272433_10001222
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 47248
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (21.28%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.87
  • Long. (^o): 160.75

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F011463	Metagenome	290	Y
F028368	Metagenome	191	Y
F033266	Metagenome	177	Y
F057012	Metagenome	136	Y
F068292	Metagenome	124	Y
F080688	Metagenome	114	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272433_1000122212	F057012	N/A	LINIEVTDMMFINDSLISELCERFDIQSISLFKLKLIHSYDEILDXKFITHALYISVTIQEHKNEMMSLLITCLDQHKIIINNLXLKRNQILINSANNXLISLSNIQILKLIILKASSQSAFHQFESSEICEMKXKNLKSMSMIILKXTTNLKSVNXFIESALIXKQST
Ga0272433_1000122213	F011463	N/A	MKELLSFNHQQLKKTKLIIEAQINKHKXDVIYEINDXVXLFFRNVKITKSCKDLKDKQLELYQITVKAKIFYHLHLSISMKHLHSMFSSKLLQSYSEDFLSEQHVNSLRFIIIDDDDDKHXKINDILNFRRYXDQIQYKIKXKDLDKDDEXYYVNKDEFNDFKKVLNEFHMLYSRKSR
Ga0272433_1000122215	F080688	N/A	MHXTTHSDVYXSSDFEDLHEKQTVESMINQLSERSIEVQLSDHL
Ga0272433_1000122217	F028368	N/A	LKENYFEKLFLIDAHLISQNQSFSLRSLIDSDSVIYMIIHSNLVDKVCKKLKIQPILLTKEKLIRDYDEKISKKIITHKILFNLIIKSHKKLIVSMLIIDINHHEVILSKLXMNKNEILLNMRNDVIVFPNQLNTSISIFSILLNSKHSNXSRSTSSSSITQTKISMMLKRLISFSAQKESFLIQSINAALFKTLLNHSKRNKIKVFALFMMNINRKITYNTWCNLNALNVFSINETTQNLKDIKAKLSLKYHEFLDVFDXAQLNKLLSHHFYDHKIELISDSMLSCCRVYXIFSVKLLKIKKYLNENLLKKFITSSQTLYFFLVLFTLKANEDL
Ga0272433_1000122219	F033266	N/A	MLNRSFIEEHFEEFXNRFSQIFDADSLKSRTKSSSAASFIHEDDKSFAETIIFLVFYEIXKTQSLVLDKETDQLYKLNKQQEDEIKELKTKL
Ga0272433_100012224	F001253	N/A	MMKDVLISSTMSSLNDLFASKSLTTECVLSSNEISYSLKSLIDIEAADYLFIDKLTAQNVCDYLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTV
Ga0272433_100012225	F068292	N/A	MSHQDTQSAEQRVNQKEASIISVLIHCSEVERNSTFEAYFQRESSTLSDNKNKNNHHKFIKLLNSLIFIEINDFIXKTXNIKIADKLNVNVNHYSIEKICIVYVIFRLEDDADQQIYAKHHVDAFSLYQSLLELLKHLKEIYKDQNLIXKCHYKYIALKQLNKLFSSFYSEFTRIFSFLNYNNVTLMNDIQNKINNHLQNALSICLIKFSSFDKLKILLQDVNNKQXVNYQLRDE