NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0272433_10001222

Scaffold Ga0272433_10001222


Overview

Basic Information
Taxon OID3300031450 Open in IMG/M
Scaffold IDGa0272433_10001222 Open in IMG/M
Source Dataset NameRock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)47248
Total Scaffold Genes47 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (21.28%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Victoria Land
CoordinatesLat. (o)-77.87Long. (o)160.75Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001253Metagenome736Y
F011463Metagenome290Y
F028368Metagenome191Y
F033266Metagenome177Y
F057012Metagenome136Y
F068292Metagenome124Y
F080688Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0272433_1000122212F057012N/ALINIEVTDMMFINDSLISELCERFDIQSISLFKLKLIHSYDEILDXKFITHALYISVTIQEHKNEMMSLLITCLDQHKIIINNLXLKRNQILINSANNXLISLSNIQILKLIILKASSQSAFHQFESSEICEMKXKNLKSMSMIILKXTTNLKSVNXFIESALIXKQST
Ga0272433_1000122213F011463N/AMKELLSFNHQQLKKTKLIIEAQINKHKXDVIYEINDXVXLFFRNVKITKSCKDLKDKQLELYQITVKAKIFYHLHLSISMKHLHSMFSSKLLQSYSEDFLSEQHVNSLRFIIIDDDDDKHXKINDILNFRRYXDQIQYKIKXKDLDKDDEXYYVNKDEFNDFKKVLNEFHMLYSRKSR
Ga0272433_1000122215F080688N/AMHXTTHSDVYXSSDFEDLHEKQTVESMINQLSERSIEVQLSDHL
Ga0272433_1000122217F028368N/ALKENYFEKLFLIDAHLISQNQSFSLRSLIDSDSVIYMIIHSNLVDKVCKKLKIQPILLTKEKLIRDYDEKISKKIITHKILFNLIIKSHKKLIVSMLIIDINHHEVILSKLXMNKNEILLNMRNDVIVFPNQLNTSISIFSILLNSKHSNXSRSTSSSSITQTKISMMLKRLISFSAQKESFLIQSINAALFKTLLNHSKRNKIKVFALFMMNINRKITYNTWCNLNALNVFSINETTQNLKDIKAKLSLKYHEFLDVFDXAQLNKLLSHHFYDHKIELISDSMLSCCRVYXIFSVKLLKIKKYLNENLLKKFITSSQTLYFFLVLFTLKANEDL
Ga0272433_1000122219F033266N/AMLNRSFIEEHFEEFXNRFSQIFDADSLKSRTKSSSAASFIHEDDKSFAETIIFLVFYEIXKTQSLVLDKETDQLYKLNKQQEDEIKELKTKL
Ga0272433_100012224F001253N/AMMKDVLISSTMSSLNDLFASKSLTTECVLSSNEISYSLKSLIDIEAADYLFIDKLTAQNVCDYLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTV
Ga0272433_100012225F068292N/AMSHQDTQSAEQRVNQKEASIISVLIHCSEVERNSTFEAYFQRESSTLSDNKNKNNHHKFIKLLNSLIFIEINDFIXKTXNIKIADKLNVNVNHYSIEKICIVYVIFRLEDDADQQIYAKHHVDAFSLYQSLLELLKHLKEIYKDQNLIXKCHYKYIALKQLNKLFSSFYSEFTRIFSFLNYNNVTLMNDIQNKINNHLQNALSICLIKFSSFDKLKILLQDVNNKQXVNYQLRDE

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