Basic Information | |
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Taxon OID | 3300031450 Open in IMG/M |
Scaffold ID | Ga0272433_10001222 Open in IMG/M |
Source Dataset Name | Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 47248 |
Total Scaffold Genes | 47 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (21.28%) |
Novel Protein Genes | 7 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 7 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Opisthokonta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica |
Source Dataset Sampling Location | ||||||||
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Location Name | Antarctica: Victoria Land | |||||||
Coordinates | Lat. (o) | -77.87 | Long. (o) | 160.75 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F001253 | Metagenome | 736 | Y |
F011463 | Metagenome | 290 | Y |
F028368 | Metagenome | 191 | Y |
F033266 | Metagenome | 177 | Y |
F057012 | Metagenome | 136 | Y |
F068292 | Metagenome | 124 | Y |
F080688 | Metagenome | 114 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0272433_1000122212 | F057012 | N/A | LINIEVTDMMFINDSLISELCERFDIQSISLFKLKLIHSYDEILDXKFITHALYISVTIQEHKNEMMSLLITCLDQHKIIINNLXLKRNQILINSANNXLISLSNIQILKLIILKASSQSAFHQFESSEICEMKXKNLKSMSMIILKXTTNLKSVNXFIESALIXKQST |
Ga0272433_1000122213 | F011463 | N/A | MKELLSFNHQQLKKTKLIIEAQINKHKXDVIYEINDXVXLFFRNVKITKSCKDLKDKQLELYQITVKAKIFYHLHLSISMKHLHSMFSSKLLQSYSEDFLSEQHVNSLRFIIIDDDDDKHXKINDILNFRRYXDQIQYKIKXKDLDKDDEXYYVNKDEFNDFKKVLNEFHMLYSRKSR |
Ga0272433_1000122215 | F080688 | N/A | MHXTTHSDVYXSSDFEDLHEKQTVESMINQLSERSIEVQLSDHL |
Ga0272433_1000122217 | F028368 | N/A | LKENYFEKLFLIDAHLISQNQSFSLRSLIDSDSVIYMIIHSNLVDKVCKKLKIQPILLTKEKLIRDYDEKISKKIITHKILFNLIIKSHKKLIVSMLIIDINHHEVILSKLXMNKNEILLNMRNDVIVFPNQLNTSISIFSILLNSKHSNXSRSTSSSSITQTKISMMLKRLISFSAQKESFLIQSINAALFKTLLNHSKRNKIKVFALFMMNINRKITYNTWCNLNALNVFSINETTQNLKDIKAKLSLKYHEFLDVFDXAQLNKLLSHHFYDHKIELISDSMLSCCRVYXIFSVKLLKIKKYLNENLLKKFITSSQTLYFFLVLFTLKANEDL |
Ga0272433_1000122219 | F033266 | N/A | MLNRSFIEEHFEEFXNRFSQIFDADSLKSRTKSSSAASFIHEDDKSFAETIIFLVFYEIXKTQSLVLDKETDQLYKLNKQQEDEIKELKTKL |
Ga0272433_100012224 | F001253 | N/A | MMKDVLISSTMSSLNDLFASKSLTTECVLSSNEISYSLKSLIDIEAADYLFIDKLTAQNVCDYLQIESLSLIKLKSIREFDDHYAKKLITHAIYLNLTV |
Ga0272433_100012225 | F068292 | N/A | MSHQDTQSAEQRVNQKEASIISVLIHCSEVERNSTFEAYFQRESSTLSDNKNKNNHHKFIKLLNSLIFIEINDFIXKTXNIKIADKLNVNVNHYSIEKICIVYVIFRLEDDADQQIYAKHHVDAFSLYQSLLELLKHLKEIYKDQNLIXKCHYKYIALKQLNKLFSSFYSEFTRIFSFLNYNNVTLMNDIQNKINNHLQNALSICLIKFSSFDKLKILLQDVNNKQXVNYQLRDE |
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