Scaffold Ga0272438_1003494

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1003494
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19911
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (27.27%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004755	Metagenome	424	Y
F009580	Metagenome	315	Y
F028367	Metagenome	191	Y
F052973	Metagenome	141	Y
F080688	Metagenome	114	Y
F087980	Metagenome	109	Y
F094624	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100349411	F087980	N/A	LINDERVVKQFTQSVIENSVEIFHVMQELQNQVQQHDVIILSSFIILNSSIYIKLNSQSFAMITQIITQILNNQSFLVVHSSANSVAVFIASRFKKLLDISEYERDKDQLNA
Ga0272438_100349417	F094624	N/A	LINLNQNLCLNFKSFESLLKNLTFQAXDKLINVKEFIKKMKKLTEHLCDEMLIAQIIYKFNVNLFCRSCFKYFVENEVXLNVCNFSITHFIVKLNDHNVDLFKIKRVFKNNFLIIELNLSTFMKIHLIFHVILLNHITSDFLSN
Ga0272438_100349419	F028367	N/A	LYLDSIKVIIISVFYINSIFNLAQFLTENYFEKLFLIDVHLIFQNRSFSLCSLINSDSVIYMIIHFNLVNKVCKKLRIQFILLTKEKLIKDYDEKIFKKIITHKILLNLIIESHKKLIVSMLITDIDYHEVILSKLXMNKNEILLNMQNNIIVFLNQLNTSISIFSILLNSKHLSXSRSTSSSSITQTKIFMMLK
Ga0272438_10034942	F052973	N/A	MFRDCARFERDVFVTRKECDVDEQDVGERKGCWGRKRVLDHIWARSGPDLG
Ga0272438_100349421	F080688	N/A	MTQAEMHXIIHSDVHXSSDFKDLHEKQTVESMTSQLSEHFIEVQLSDHLXIRQNEH
Ga0272438_10034946	F009580	GAG	MICIQISKCNLAQKLNFFCKQRDFFIYIDDVIVINVHDMQSEELLIXAFFNDFAXMLQFAVVAQLSLVADFLDFRNDQNLILNDDNDKT
Ga0272438_10034948	F004755	GAG	LFDDSNKKVNFRKEYYNLIQEFKKFNEFYTQFQRLSFYLDYHEKQLIIDLKDKIHLRLXFIXVNQLVQSDSLKEIHFYLIHLNNDQRVIQEIKNKIKRVNDFSKTIFHKATVITQSVDHLKSDQLKLHDAILTNVKEADILVESCFICHKSNHSFKECLNXSTRINAVNNEYDCFDFDSNFNSKN