Scaffold Ga0272438_1002637

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1002637
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23861
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (32.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001951	Metagenome	612	Y
F004755	Metagenome	424	Y
F008735	Metagenome	328	Y
F010214	Metagenome	306	Y
F038009	Metagenome	166	Y
F080688	Metagenome	114	Y
F089602	Metagenome	108	Y
F096307	Metagenome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100263711	F038009	N/A	LIELICLKNNRSFRKKRILTLDFXXIFFLNDLKNTTRSFLFQMRDKIEXNLFLVNELSISXLLVSKREFILLLVSRXKTELLFASELRTELLLVSELKTELLLSSKXKIKLLLASKLSAKLLLSSKXKTKLLLASKLNAELLLVNDL
Ga0272438_100263715	F010214	GAG	VSVLFIYDASSLLCSSLTIFYTTMFRFDSRFEDKRRFLCTRDACDCNVRRAAFSCSMIVIHCAEKHVMKERCTRXKDRVXLYXVTLFFSXFDLCHVNVEXTVSIDVRSQSFDVXLXSMKENAFXSFSXALNFSRR
Ga0272438_100263722	F096307	GAG	MLYIVVTQIDASLKEDVLKHKKDVDLKDVCDIKKYVCHRNLLIIHNTKKCVCLEDNRSXLEDAEKEKRCXVISXLALIIMQRTR
Ga0272438_100263725	F080688	N/A	MLXTLMTXIEMHXITHSDVHQSSDFEDFYEKQTVESMTSQLSEHSIEVQISNHL
Ga0272438_100263727	F004755	GAG	LNYVHSRLFNNAAKIIQAKCKHDYVNFYKIVNDLLKELAQLFNDLNKKVNFRRKYYNLIQEFKKFNEFYTQFQRLSFYLDYHKKQLIADLKDKIHSCLXFIXVNQLVQSDSLKEIHFYLIHLNNDQRIIXKIKDKIKRVDDLSKTIFHKATVVTQSVNYSKSDHLKLHEVILTSVKEADILVESFFVCHKSDHSSKECFNRLTRINAMNNEYDRFNFNSNFDSKN
Ga0272438_10026376	F008735	N/A	VNLLIYDESXLDINDLSLMKEIMIIVYVHALYQTLLSCIQSIFVSFIFKYVKKLLEFRSNDDSDRVHREMNDEERLIVQDLCNDLSYYCKRLRIQFYINXRTENNKXEXDNNIMLLNLILKLAHCAKDLNXIFDYTLSKLFNSLLIVDQEAMRLLHLSEKITRRDFNVXKRCRKCRSFIMSKTRLN
Ga0272438_10026377	F089602	N/A	LSFIEISSEENDDLSEIIDITLQTVNQQEIFDQRTFFLLIEEIVIFSKAIHVLL
Ga0272438_10026378	F001951	GAG	MMIIIKLKFINSSRNKKERDEDTVETTVTKMIIFELKEILVNAKMLLTLTNEMMTKMKQD