Scaffold Ga0272438_1000684

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000684
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51245
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (21.28%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Associated Families: 9

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000597	Metagenome	998	Y
F001951	Metagenome	612	Y
F019260	Metagenome	230	Y
F020121	Metagenome	225	Y
F048018	Metagenome	148	Y
F057012	Metagenome	136	Y
F065269	Metagenome	127	Y
F080688	Metagenome	114	Y
F098340	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100068410	F000597	N/A	VLISSTMSMSDYFFASESLTIECVLSSNEISYPLKSLIDIKAADYSFIDEVIMQIVYDQLQIESLTLIKVKSIQEFDNHYAKKLIIHIIYLNLTV
Ga0272438_100068418	F019260	N/A	MIQELKSISKINIKSEKYLNSELYIKERENKLNQFIFKLISKLKLNVNHYSTLESHLLYEYSRLLKNAVAQALSRMTAQHDKLVTIEQLVVLLRQVFDDSDKQEIAQRFISALRMQNCIFIEYLFDFQQHIDVIKYDVVTXKFNLKNELFSELKALLIQMNVSSLNYEQLIIKCQQLNSQYRVTVQNLFKSKAVIHFVSVTSTVSAYLVKYATLLIDLKVTISSLRNFMNLLIINMKKXDSLTLEKHQHCMINHLCLYCNKSEHQTAICNSKLKIQLXVISLFVLAIFINNLAFNTSFILKKV
Ga0272438_100068421	F080688	N/A	MLQTLMTXAEMHXTIHSDIHQLSDFEDFHEKQTVESMTSQLFEHSIKVQLSNYL
Ga0272438_100068423	F001951	N/A	MIITKLRFIDSSKDEKEKDEDTVETTVTKMMILELKELLVDTKMFLTLMNKTMIKMKXD
Ga0272438_100068429	F098340	N/A	MIKVAAYQTLVKNKKIKIFFLIINEINKALSSVEDFAKLNKMISVMSLNKLKKKLLIVYHDFLNVFDREKITQLSLHXSYDYKIELKDES
Ga0272438_100068430	F057012	N/A	VTESDIFIFCFISMFDDSFNFKSFTVDVILSSLEKIFRFFALINTEVIDMTFIDESLMSELCERFDIQSISLLKSKLIQLYDEISDXNLIIHALYTLIMIQEYKNEMMFLLITHLNQHKIIIENLXLKRNQILIDSANDQLISSLKIQTSKSVVLKASSQLAFYRSESNKICKMKQKNLNLIVTSMIILKRFLNQKSVNKFIESAQFIESTLIAKQST
Ga0272438_100068432	F065269	N/A	VSIAHYDFQNVKRESLLSQNRTASEEENMNALSDTEEENMNVLLFDHEMIKISISTELNA
Ga0272438_100068434	F048018	N/A	MTLSXVSXMIXRHSLSELSMYFLSXKYRXFLCFSHSTRKILLXCRASLQSTLIIXAANLSLISICFHNVXVKVSAESSSRFKVSXFSXNLMFSTSNSSISKFVRAKICKDAEITENKCNXTESRMMICDXSFMTLMLKMSRVRFSTISRFKT
Ga0272438_100068435	F020121	GAG	MKKLIEHLCDEMFIAQIIYEFNVNLSYHSCFKYFIEDEIXLNACNLSIVHLVVKLNDYNINFFKIKCVFVNNSLIIKLNLSAFMKIHSIFHVILLSHIASDSLLNQHQKSQELIIIKNDERFXYVNSILNFKHDKCYNSSLLKYYVDXENHFSTXKSFHLLNNYEQILNEYHLVNSVVEESHVLSCVMSQCQCQEL