Scaffold Ga0272438_1000323

Overview

Basic Information

• Taxon OID: 3300031448
• Scaffold ID: Ga0272438_1000323
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Knobhead nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 73125
• Total Scaffold Genes: 84
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (11.90%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -77.9
  • Long. (^o): 161.58

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008115	Metagenome	338	Y
F070710	Metagenome	122	Y
F080688	Metagenome	114	Y
F100079	Metagenome	102	Y
F102179	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272438_100032316	F070710	N/A	MTKQSFLRILQYNIRKLLRIQESFLINREVREFNIVAIQKQDRNNNDLQSFSAAHNFFHLVKNSSSQSRTCIYINKCLRLDQXIVETAESDICSIRILTRNTDNETQTLRLLNVYNSCSLSTTFTERSSIISRLNKLLKNDCK
Ga0272438_100032326	F100079	N/A	MFRHRHFIHEXYIDEKTLLKEERYKRINKEXSNYAVXLKV
Ga0272438_100032331	F102179	N/A	MSVHNVNENMSTYSAMHVRSMLLKIMTLAVQEMHLDEVYFLRSRISQFKLITSRSTNVETLIHKDHNVTEKQLNSVAETVDCKQLILHAIVKVLTIHEMIXNFSNKFIVKLIKILQQEDEFAVKLKADEMMSI
Ga0272438_100032357	F080688	N/A	MTXAEMHXTIHSNVHXSSDFKDLHEKQTVELITSQLSEHSIEVQLSDHL
Ga0272438_100032358	F008115	N/A	LNRDFQFISTIXKSLCKXLRITASLFTVYHSEINDQLKXVNQDVKRELRIYCNYMQNDXISVIKFSDNFKIFSITSMILFYFNKEFHSXMSFDSNMIDYETTCERLEARKANDIIIQMKKLLNFDHQQLKKTKLIIEVQINKHRRNVIYKVNDXVXLSFRNVKTTRLCKDLKDKQLNLYQITAKVSIFYHLHLSVSIKHLHSMFSSKLLXSYSEDLLSEQHSESLRSITIKDDKHXKINDILNFRCYQDXIQYKVK