Scaffold Ga0272435_1001003

Overview

Basic Information

• Taxon OID: 3300031447
• Scaffold ID: Ga0272435_1001003
• Source Dataset Name: Rock endolithic microbial communities from Victoria Land, Antarctica - Ricker Hills nord
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35427
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (17.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock → Rock Endolithic Microbial Communities From Victoria Land, Antarctica

Source Dataset Sampling Location

• Location Name: Antarctica: Victoria Land
• Coordinates
  • Lat. (^o): -75.7
  • Long. (^o): 159.2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001253	Metagenome	736	Y
F005901	Metagenome	386	Y
F028367	Metagenome	191	Y
F028368	Metagenome	191	Y
F057011	Metagenome	136	Y
F074203	Metagenome	119	Y
F080688	Metagenome	114	Y
F087978	Metagenome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0272435_100100312	F001253	N/A	MKDVLISSTISSLNDLFVLKSLTIEYVLFSNEISYSLKLLINTEAADYSFIDELIAQNVYDHLQIESLSLIKLKSIRKFDNHYAKKLITHAIYLNLTV
Ga0272435_100100315	F005901	N/A	VISRLEDDAAEHIFARRRHDASHSYISIDELFEHLKEIYNELNRNRKCRREYNALRQTDKSFNVFYFNFMKLFSYLDYDDRTLMNDLQNKINNRLQNALSVCSENFTSLTRLRIFLQDMNNKQRVNYQLRSQLRTVIVKVTVVPDKCAATSLSAVMTSIIKYVKSTIFSISESVRSSIVCYICKISDHLFKNCSQNKIDISTSHAFTSRLHEIVISKNKENEKMSSFSKNSEAKN
Ga0272435_100100319	F057011	N/A	LKENYFEKSFLINASLISQSNSFNLHSLINSDFIIYMLIHDKLVNKVCQKLEIQFILLAKKKLIQDYDEKLVRKTITHKILFNLMIESHKKLTMSMLIADIEHHEAILSKLXMNKNEMLLNMRHDTIIFLNQLNISISIFLISSNTKHLSXSRSTLISSAAHSKTFKMLKHSVSFFQKESFLIQNINIIFFQALVKRKKKN
Ga0272435_100100327	F028367	N/A	VKIIFLCNLNEILSKENYFDKSFLVNALLILQNELFSLRSLIDSDSVIYTIIHINLVDKVCKELKIQSISLTKEKLIKEYDEKIFKKTITHKILLNLIIESHKKLIVSMLIADINHYEVILEKSXMNKNEILLNMQINIIVFLNQLNTLISIFSISFNSKHLSXLXSTLFTFISQSKISRMLK
Ga0272435_100100329	F080688	N/A	MHXTTHLNVHXSSDFENLHEKQTVKSTTSQLSEHFIKVQLSDHL
Ga0272435_100100331	F087978	N/A	MFSLKLLXSYLKDSLSEQHSESLKSIIIKDDEHXKINNILKFRCYQDXIQYKVKXKDLNRNDEXYYIDKEKFNDSEKVLNEFHKLYSSKSR
Ga0272435_10010037	F028368	N/A	LYKLDEILLKKNYFEKSFLIDTHLIFQKXSFSLHFLIDSDSVIYMIIHFNLVDKVCKKLKIQFISLIKEKLIRDYDEKIFKKTITHKILLNLIIENHKKLTISMLIADINFHEVILSKLXMNKNEILLNMQSNIIVFLNQLNASISIFLISLNSKHLSXSRSTSLSSITQTKTFMMLKRLVSITAQKKSFSIQSINVASFKTLLNHLKKNKIEVFALFMMNINKEIAYNTQCNLNALNVSLINETTQNLKDIKAKLSLK
Ga0272435_10010038	F074203	N/A	MFSHSFIKEHSEEFRNRFFHIFDADSSKSRTKSSSAASFIHEDDKLFIETIIFLVFYEIXKTXSLALDKETDQLYKLNKQQENEIKELKTRLQAKENTSSDFIYFKRSRSQKIPDSSLFTDEKNFTXKNXYEKIQNKLEINVNLFFNKRVKLSYVHSKLFNDAAKITQAKHEHDCVNFYKIVKDLLKELAQLFNDSNKKVNFRRKYYNLIQESKKFSEFYTQFQQLSFYLNYHEKQLIIDLKDKIHLCF