Scaffold Ga0170820_13697990

Overview

Basic Information

• Taxon OID: 3300031446
• Scaffold ID: Ga0170820_13697990
• Source Dataset Name: Fir Summer Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1763
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Mazerulles, Grand Est.
• Coordinates
  • Lat. (^o): 48.7585
  • Long. (^o): 6.3578

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008790	Metagenome / Metatranscriptome	328	Y
F018651	Metagenome / Metatranscriptome	234	Y
F067623	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0170820_136979901	F018651	N/A	MQNIEFRQIMRDAEIANAIFPVVRQHRLTQVATEEALRELAVPRAANIARICVSLGL
Ga0170820_136979902	F008790	GAGG	MITPILRSKDAMATWLIDVAGNVAISISDLALLKRIRSLIIPAFVSTEEAMLWGSDLNPEQRATLLDMQRSVSNAARAEVDPQRMVNLATQSQLLREAAEAAPFEGQR
Ga0170820_136979903	F067623	N/A	LKNLIESEMEAAARQRSEIYFMRHKASKGRAVLFRQLRASATNQICDLKQLTLGNAYITPELPSGQRLLKGFAS