NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307968_1023801

Scaffold Ga0307968_1023801


Overview

Basic Information
Taxon OID3300031399 Open in IMG/M
Scaffold IDGa0307968_1023801 Open in IMG/M
Source Dataset NameSaline water microbial communities from Organic Lake, Antarctica - #650
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3034
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameAntarctica: Organic Lake
CoordinatesLat. (o)-68.4561Long. (o)78.1899Alt. (m)Depth (m)6
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034412Metagenome175Y
F104106Metagenome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0307968_10238013F104106AGGVYLVSYRVGDIDMLSGRSEYLCERLCRMVVVANDL
Ga0307968_10238015F034412GAGGVIIEEAGDVCGSKFGVSKTEDWAGSPLLVDGSVCVGGGPLIKLFVMGCLWCVAERGC

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