Metagenome Family F104106

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F104106
Family Type	Metagenome
Number of Sequences	101
Average Sequence Length	38 residues
Representative Sequence	VYLVSYRVDDIDMLGGRSDYLCERLCCMVVVASDL
Number of Associated Samples	28
Number of Associated Scaffolds	101

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Eukaryota
% of genes with valid RBS motifs	62.38 %
% of genes near scaffold ends (potentially truncated)	35.64 %
% of genes from short scaffolds (< 2000 bps)	38.61 %
Associated GOLD sequencing projects	28
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.16

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Eukaryota (54.455 % of family members)
NCBI Taxonomy ID	2759
Taxonomy	All Organisms → cellular organisms → Eukaryota

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water (96.040 % of family members)
Environment Ontology (ENVO)	Unclassified (96.040 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (96.040 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.11% β-sheet: 0.00% Coil/Unstructured: 88.89%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.16
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.16
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 101 Family Scaffolds
PF00078	RVT_1	7.92
PF00075	RNase_H	3.96
PF01327	Pep_deformylase	0.99
PF00225	Kinesin	0.99
PF00385	Chromo	0.99
PF00849	PseudoU_synth_2	0.99
PF00538	Linker_histone	0.99
PF00069	Pkinase	0.99

COG ID	Name	Functional Category	% Frequency in 101 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.96
COG0242	Peptide deformylase	Translation, ribosomal structure and biogenesis [J]	0.99
COG0564	Pseudouridine synthase RluA, 23S rRNA- or tRNA-specific	Translation, ribosomal structure and biogenesis [J]	0.99
COG1187	Pseudouridylate synthase RsuA, specific for 16S rRNA U516 and 23S rRNA U2605	Translation, ribosomal structure and biogenesis [J]	0.99

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Chlorophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
core chlorophytes	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	54.46 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Chlorophyceae	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae	52.48 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
CS clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade	52.48 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Chlamydomonadales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales	52.48 %
Unclassified	root	N/A	45.54 %

Name	Rank	Taxonomy	Distribution
Dunaliellaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae	51.49 %
Unclassified	root	N/A	45.54 %
Volvocaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae	0.99 %

Name	Rank	Taxonomy	Distribution
Dunaliella	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella	51.49 %
Unclassified	root	N/A	45.54 %
Gonium	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae → Gonium	0.99 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	45.54 %
Dunaliella viridis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	36.63 %
Dunaliella tertiolecta	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	13.86 %
Gonium pectorale	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae → Gonium → Gonium pectorale	0.99 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918027\|contig16338	Not Available	623	Open in IMG/M
3300012108\|Ga0136562_122857	Not Available	571	Open in IMG/M
3300012109\|Ga0136583_1026877	Not Available	582	Open in IMG/M
3300028339\|Ga0306916_112282	Not Available	561	Open in IMG/M
3300031211\|Ga0307974_1000287	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	29675	Open in IMG/M
3300031211\|Ga0307974_1000306	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	28868	Open in IMG/M
3300031211\|Ga0307974_1002124	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	14001	Open in IMG/M
3300031211\|Ga0307974_1003270	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	11639	Open in IMG/M
3300031211\|Ga0307974_1004649	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	9788	Open in IMG/M
3300031211\|Ga0307974_1005504	Not Available	8993	Open in IMG/M
3300031211\|Ga0307974_1006007	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	8554	Open in IMG/M
3300031211\|Ga0307974_1007815	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	7388	Open in IMG/M
3300031211\|Ga0307974_1008040	Not Available	7259	Open in IMG/M
3300031211\|Ga0307974_1009289	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	6635	Open in IMG/M
3300031211\|Ga0307974_1010433	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	6156	Open in IMG/M
3300031211\|Ga0307974_1013903	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	5113	Open in IMG/M
3300031211\|Ga0307974_1016224	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	4573	Open in IMG/M
3300031211\|Ga0307974_1018423	Not Available	4177	Open in IMG/M
3300031211\|Ga0307974_1018525	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	4161	Open in IMG/M
3300031211\|Ga0307974_1021528	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	3710	Open in IMG/M
3300031211\|Ga0307974_1021819	Not Available	3675	Open in IMG/M
3300031211\|Ga0307974_1022352	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3603	Open in IMG/M
3300031211\|Ga0307974_1023638	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	3457	Open in IMG/M
3300031211\|Ga0307974_1025220	Not Available	3292	Open in IMG/M
3300031211\|Ga0307974_1025285	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3286	Open in IMG/M
3300031211\|Ga0307974_1025574	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3258	Open in IMG/M
3300031211\|Ga0307974_1025702	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	3246	Open in IMG/M
3300031211\|Ga0307974_1027909	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	3049	Open in IMG/M
3300031211\|Ga0307974_1028778	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2980	Open in IMG/M
3300031211\|Ga0307974_1030552	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2847	Open in IMG/M
3300031211\|Ga0307974_1031413	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	2789	Open in IMG/M
3300031211\|Ga0307974_1062620	Not Available	1633	Open in IMG/M
3300031212\|Ga0307959_1170452	Not Available	519	Open in IMG/M
3300031218\|Ga0307976_1089949	Not Available	675	Open in IMG/M
3300031218\|Ga0307976_1120014	Not Available	576	Open in IMG/M
3300031221\|Ga0307948_1001022	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella	19471	Open in IMG/M
3300031221\|Ga0307948_1004092	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	10769	Open in IMG/M
3300031221\|Ga0307948_1005474	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	9328	Open in IMG/M
3300031221\|Ga0307948_1010604	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	6475	Open in IMG/M
3300031221\|Ga0307948_1012524	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes	5823	Open in IMG/M
3300031221\|Ga0307948_1014815	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	5183	Open in IMG/M
3300031221\|Ga0307948_1024226	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	3610	Open in IMG/M
3300031221\|Ga0307948_1031933	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2854	Open in IMG/M
3300031221\|Ga0307948_1038458	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2427	Open in IMG/M
3300031221\|Ga0307948_1084619	Not Available	1177	Open in IMG/M
3300031221\|Ga0307948_1100472	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	997	Open in IMG/M
3300031221\|Ga0307948_1108022	Not Available	929	Open in IMG/M
3300031221\|Ga0307948_1113555	Not Available	885	Open in IMG/M
3300031222\|Ga0307972_1002145	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	10423	Open in IMG/M
3300031222\|Ga0307972_1004143	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	7773	Open in IMG/M
3300031222\|Ga0307972_1029858	Not Available	3020	Open in IMG/M
3300031222\|Ga0307972_1139083	Not Available	853	Open in IMG/M
3300031222\|Ga0307972_1145149	Not Available	814	Open in IMG/M
3300031225\|Ga0307942_1002910	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	13916	Open in IMG/M
3300031225\|Ga0307942_1004508	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	11061	Open in IMG/M
3300031225\|Ga0307942_1009282	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	7096	Open in IMG/M
3300031225\|Ga0307942_1019335	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	4064	Open in IMG/M
3300031225\|Ga0307942_1020628	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3861	Open in IMG/M
3300031225\|Ga0307942_1030413	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2833	Open in IMG/M
3300031243\|Ga0307970_1059901	Not Available	848	Open in IMG/M
3300031333\|Ga0307936_1027452	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	1696	Open in IMG/M
3300031333\|Ga0307936_1038700	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	1412	Open in IMG/M
3300031333\|Ga0307936_1089809	Not Available	881	Open in IMG/M
3300031334\|Ga0307969_1021162	Not Available	1662	Open in IMG/M
3300031334\|Ga0307969_1142166	Not Available	534	Open in IMG/M
3300031335\|Ga0307951_1031745	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2471	Open in IMG/M
3300031335\|Ga0307951_1033661	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	2340	Open in IMG/M
3300031339\|Ga0307932_1080518	Not Available	862	Open in IMG/M
3300031339\|Ga0307932_1123995	Not Available	671	Open in IMG/M
3300031339\|Ga0307932_1124747	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	669	Open in IMG/M
3300031339\|Ga0307932_1189869	Not Available	521	Open in IMG/M
3300031343\|Ga0307952_1005792	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	5755	Open in IMG/M
3300031343\|Ga0307952_1017973	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Volvocaceae → Gonium → Gonium pectorale	3243	Open in IMG/M
3300031343\|Ga0307952_1026532	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	2586	Open in IMG/M
3300031343\|Ga0307952_1028781	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	2455	Open in IMG/M
3300031343\|Ga0307952_1092098	Not Available	968	Open in IMG/M
3300031382\|Ga0307971_1140769	Not Available	701	Open in IMG/M
3300031387\|Ga0307947_1005047	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	10218	Open in IMG/M
3300031393\|Ga0307967_1003375	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	9067	Open in IMG/M
3300031393\|Ga0307967_1079394	Not Available	1306	Open in IMG/M
3300031393\|Ga0307967_1098412	Not Available	1081	Open in IMG/M
3300031394\|Ga0307963_1031221	Not Available	2523	Open in IMG/M
3300031394\|Ga0307963_1085408	Not Available	1027	Open in IMG/M
3300031394\|Ga0307963_1114166	Not Available	795	Open in IMG/M
3300031395\|Ga0307957_1122174	Not Available	531	Open in IMG/M
3300031396\|Ga0307944_1086806	Not Available	834	Open in IMG/M
3300031396\|Ga0307944_1107291	Not Available	731	Open in IMG/M
3300031396\|Ga0307944_1117106	Not Available	691	Open in IMG/M
3300031397\|Ga0307960_1112959	Not Available	819	Open in IMG/M
3300031399\|Ga0307968_1010646	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	6384	Open in IMG/M
3300031399\|Ga0307968_1023801	Not Available	3034	Open in IMG/M
3300031399\|Ga0307968_1032149	Not Available	2274	Open in IMG/M
3300031404\|Ga0307945_1007751	Not Available	8312	Open in IMG/M
3300031607\|Ga0307966_1035730	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	3170	Open in IMG/M
3300031684\|Ga0307946_1002699	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella viridis	7932	Open in IMG/M
3300031684\|Ga0307946_1007432	Not Available	4992	Open in IMG/M
3300031684\|Ga0307946_1038983	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Chlorophyta → core chlorophytes → Chlorophyceae → CS clade → Chlamydomonadales → Dunaliellaceae → Dunaliella → Dunaliella tertiolecta	1951	Open in IMG/M
3300031704\|Ga0307943_1008181	Not Available	4840	Open in IMG/M
3300031704\|Ga0307943_1073600	Not Available	1298	Open in IMG/M
3300031704\|Ga0307943_1119863	Not Available	867	Open in IMG/M
3300031704\|Ga0307943_1158341	Not Available	671	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	100.00%

Habitat	Taxonomy	Distribution
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	99.01%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline	0.99%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	99.01%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified	0.99%

Habitat	Taxonomy	Distribution
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	96.04%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	2.97%
Hypersaline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Hypersaline → Unclassified → Hypersaline	0.99%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918027	Hypersaline microbial communities from Antarctic Deep Lake - 36m 3.0um, 0.8um, 0.1um pool	Environmental	Open in IMG/M
3300012108	Saline lake microbial communities from Club lake, Antarctica - Metagenome #312	Environmental	Open in IMG/M
3300012109	Saline lake microbial communities from Deep lake, Antarctica - Metagenome #397	Environmental	Open in IMG/M
3300028339	Saline lake microbial communities from Deep Lake, Antarctica - Metagenome TFF 2006 #2 (v2)	Environmental	Open in IMG/M
3300031211	Saline water microbial communities from Organic Lake, Antarctica - #784	Environmental	Open in IMG/M
3300031212	Saline water microbial communities from Organic Lake, Antarctica - #494	Environmental	Open in IMG/M
3300031218	Saline water microbial communities from Organic Lake, Antarctica - #919	Environmental	Open in IMG/M
3300031221	Saline water microbial communities from Organic Lake, Antarctica - #280	Environmental	Open in IMG/M
3300031222	Saline water microbial communities from Organic Lake, Antarctica - #780	Environmental	Open in IMG/M
3300031225	Saline water microbial communities from Organic Lake, Antarctica - #175	Environmental	Open in IMG/M
3300031243	Saline water microbial communities from Organic Lake, Antarctica - #712	Environmental	Open in IMG/M
3300031333	Saline water microbial communities from Organic Lake, Antarctica - #1	Environmental	Open in IMG/M
3300031334	Saline water microbial communities from Organic Lake, Antarctica - #710	Environmental	Open in IMG/M
3300031335	Saline water microbial communities from Organic Lake, Antarctica - #374	Environmental	Open in IMG/M
3300031339	Saline water microbial communities from Organic Lake, Antarctica - #48	Environmental	Open in IMG/M
3300031343	Saline water microbial communities from Organic Lake, Antarctica - #376	Environmental	Open in IMG/M
3300031382	Saline water microbial communities from Organic Lake, Antarctica - #714	Environmental	Open in IMG/M
3300031387	Saline water microbial communities from Organic Lake, Antarctica - #232	Environmental	Open in IMG/M
3300031393	Saline water microbial communities from Organic Lake, Antarctica - #648	Environmental	Open in IMG/M
3300031394	Saline water microbial communities from Organic Lake, Antarctica - #594	Environmental	Open in IMG/M
3300031395	Saline water microbial communities from Organic Lake, Antarctica - #490	Environmental	Open in IMG/M
3300031396	Saline water microbial communities from Organic Lake, Antarctica - #179	Environmental	Open in IMG/M
3300031397	Saline water microbial communities from Organic Lake, Antarctica - #542	Environmental	Open in IMG/M
3300031399	Saline water microbial communities from Organic Lake, Antarctica - #650	Environmental	Open in IMG/M
3300031404	Saline water microbial communities from Organic Lake, Antarctica - #228	Environmental	Open in IMG/M
3300031607	Saline water microbial communities from Organic Lake, Antarctica - #646	Environmental	Open in IMG/M
3300031684	Saline water microbial communities from Organic Lake, Antarctica - #230	Environmental	Open in IMG/M
3300031704	Saline water microbial communities from Organic Lake, Antarctica - #177	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
ADL36m2_01288780	2140918027	Hypersaline	GWVVVYLVSYRVDDIDMLGGRSDYLCERLCCMVVVASDL
Ga0136562_1228573	3300012108	Saline Lake	VVCNLKGWAVVYLVSNRVDDIDMLSGSSDYLCERLCCMVVVASDL*
Ga0136583_10268771	3300012109	Saline Lake	WVVWNLKGWVVVYLVSYRVDGIDMLGGRSDCLCERLCCMVVVASDL*
Ga0306916_1122821	3300028339	Saline Lake	VVVYLVSYRVDDIDMLGGRNDYLCERLCCTVVVASDL
Ga0307974_100028734	3300031211	Saline Water	VYLVSYRVNDIDMLRGRSDYLCGRLCCMVVVASDLFA
Ga0307974_100030633	3300031211	Saline Water	VYLVSHRVDDINMLSGRSDYLCERVCCMVVVASNL
Ga0307974_10021249	3300031211	Saline Water	VYLVSYRVDDIDTLGGRSDNLCEHLCCMVVVASDL
Ga0307974_100327010	3300031211	Saline Water	VYLVSYRVDDIDMLGRRSDFLCERLCCMVVVAGDL
Ga0307974_10046495	3300031211	Saline Water	VYLVSYRVDDIDTLGGRSDNLCERSCCMVVVASDL
Ga0307974_100550411	3300031211	Saline Water	VYLVSYWVDDIDMLNGRSDNLCGRLCCMVAVASDL
Ga0307974_100600713	3300031211	Saline Water	VYLVSYRVDDIDTLGGRSDNLCERLCCMMVVASDL
Ga0307974_100781510	3300031211	Saline Water	VYLLSYQVDDTDTLSGRSDYLCERLCRMVVLASDL
Ga0307974_10080409	3300031211	Saline Water	VCNLKGWVVVYLVSYRVDDIDMLGGRSDNLCERLCCMVVVASDL
Ga0307974_100928910	3300031211	Saline Water	VYLVIYRVDDIDMLGGRSDYLCERLCCMVVVASDL
Ga0307974_10104334	3300031211	Saline Water	VYLVSYWVYDIDMLGGRSGNLCEFLCCMVVVASNL
Ga0307974_10139038	3300031211	Saline Water	VYLVSYRVDDIDMLGGRSDYLCERLCCMVVVASDL
Ga0307974_10162247	3300031211	Saline Water	VYLVSYRVDDIDMLGGRNDYLCERLCCTVVVASDL
Ga0307974_10184232	3300031211	Saline Water	MVCNLKGWVVVYLVSYRVNDIDMLGGRSDYLCERLCCMVVVASDL
Ga0307974_10185255	3300031211	Saline Water	VYLVSYRVDDIDTLSGRSDTLCERLCCMVVVASDL
Ga0307974_10215286	3300031211	Saline Water	VYLVCDRVDDMDMLGGRSDYLCERLCCMVVVASDL
Ga0307974_10218191	3300031211	Saline Water	VYLVSYRIDDIDMLGGRSDFSCERLCCMVVVASDL
Ga0307974_10223525	3300031211	Saline Water	VYLVSFLVDDIDTLSGRSDNLCERLCCMVVMASDL
Ga0307974_10236386	3300031211	Saline Water	VYLVSYRVDDIDTLGGRSDNLSERLCCMVVVASDL
Ga0307974_10252202	3300031211	Saline Water	VYLVSYRADDIDMLDGRSDYLCERLCCMVVVASDL
Ga0307974_10252854	3300031211	Saline Water	VYLVSYRVDNIDTLGGRSDNLCERLCCMVVVASDL
Ga0307974_10255746	3300031211	Saline Water	VVYNLKVWVVLYLVSYRVDDIDMLRGRSDYLCERLCCMVVVASDL
Ga0307974_10257025	3300031211	Saline Water	VHLVSYRVDDINMLGGRSDYLCGRLCCMVVVAGDL
Ga0307974_10279094	3300031211	Saline Water	VYLVSYRVDYIDMLGGRSGYSLCERLCCMVVVARYL
Ga0307974_10287784	3300031211	Saline Water	VCLVNYRVDVIDVLGGRSDYLCERLCCMVVVASDL
Ga0307974_10305524	3300031211	Saline Water	VYLVSYRVDNIDMLSGRSGYLCERLCCMVVVASHL
Ga0307974_10314136	3300031211	Saline Water	VYLVSYWVDDIDMLSGRSDYLCERLCCMVVVASDL
Ga0307974_10626202	3300031211	Saline Water	VCNLKGWVVVYLVSYRVDDIDMLSGRSDYLCERLCCMVVVASDL
Ga0307959_11704522	3300031212	Saline Water	VYLVSYRVDDIDMLGGRSDNLCECLFCMVVVASDLRACGAFV
Ga0307976_10899492	3300031218	Saline Water	CWVVCNLRGWVVVYLVSYRVDDIDTLGGRSDNLCERLCCMMVVASDL
Ga0307976_11200142	3300031218	Saline Water	VVCNLKGRVVVYLVSYRVDDIDMLRGKSDYLCERLCCMVVVASDL
Ga0307948_100102226	3300031221	Saline Water	VCLVSYRVDDIDMLGGRNDYFCEHLCCMVVVASDL
Ga0307948_10040925	3300031221	Saline Water	VYMVSYRVDDIDLLGGRSDNLCERLCCLVVVASDL
Ga0307948_10054742	3300031221	Saline Water	VYLISYRVDDIDMLGGRSGYLCERLCCMVVVVSDL
Ga0307948_101060410	3300031221	Saline Water	VYLVSYRVDDIDMLSGRSDFLCERLCCMVVVASDL
Ga0307948_10125241	3300031221	Saline Water	VYLVSYWVDDIDTLDGRSDNLCERLCCMVVVASDW
Ga0307948_101481513	3300031221	Saline Water	VYLVSYWVDDIDLLGGRSDYLCERLCCMVVVANDL
Ga0307948_10242263	3300031221	Saline Water	VVCNLKGWVVVYLVSYRVDDIDMLGGRSDNLCERLCCMVVVASDL
Ga0307948_10319333	3300031221	Saline Water	VYLVSYRVDDIDMLSGRSDYLCERLCRKMVVASDL
Ga0307948_10384584	3300031221	Saline Water	VYLVSHQVDDIDTLGGRSDNLCERLCCMVAVASDL
Ga0307948_10846191	3300031221	Saline Water	VYLVSYRVDDIDMLSGRSDYLCERLCCMVVVASDL
Ga0307948_11004721	3300031221	Saline Water	CWVVCNLKGWVVVYLVSYRVDDIDMLGGRSGYLCERLCCMVVVASDL
Ga0307948_11080221	3300031221	Saline Water	CWVVCNLKGWVVVYLVSYRVDDIDMLGGRSDYLCEHLCCMVVVASDLRAPVRSGLRYF
Ga0307948_11135552	3300031221	Saline Water	VVVYLASYRVDDIDMLSGRSDYLCERLCCMVVVASDL
Ga0307972_10021453	3300031222	Saline Water	VYLVSYRVDDIDMLRGKSDYLCERLCCMVVVASDL
Ga0307972_10041433	3300031222	Saline Water	VYLVSYRVDDIDCWMGGVIICVKKRLCCMVVVASEL
Ga0307972_10298583	3300031222	Saline Water	VYLVSYRVDDMDMLGGRSDYSSERLCCMVVVAIDL
Ga0307972_11390832	3300031222	Saline Water	LKGWVVVCLVSYWVYDIDMLGGRSGNLCEFLCCMVVVASNL
Ga0307972_11451491	3300031222	Saline Water	WVVCNLKGWVVVYLVSYRVDDIDMLGGRSDYLCGRLCCMVVVASDL
Ga0307942_10029102	3300031225	Saline Water	VYLISYRVDDIDTLGGRGDNLCERLCCMVVVASDL
Ga0307942_10045089	3300031225	Saline Water	VYLVSYRVDDIDTLGERSDNSCERLCCMVVVASDL
Ga0307942_10092828	3300031225	Saline Water	VYLVSYRVGDIDMLGGRSDCLCERLCCMVVVASDL
Ga0307942_10193354	3300031225	Saline Water	VYLVSYRVDDIDMLGGRSDYLCGRLCCMVVVASDL
Ga0307942_10206285	3300031225	Saline Water	VYLVRYWVDDIDDMLSGRSDYLCERLCCMVVVASDL
Ga0307942_10304134	3300031225	Saline Water	VYLVSYWVADIDTLSGRSDYLCERLCCMVVVASDL
Ga0307970_10599011	3300031243	Saline Water	VCNLKGWVVVYLVSYRVDKTDMLSGRSDYSCERLCCMVVVVSDL
Ga0307936_10274525	3300031333	Saline Water	VVCNLIGWVVVYLVSYRVDDIDMLSGRSDFLCERLCCMVVVASDL
Ga0307936_10387002	3300031333	Saline Water	VYLVSYRADDIGTLSGRSDNLCERLCCMVVVAGNL
Ga0307936_10898092	3300031333	Saline Water	VVCIFKGWVVVYLVSYRVDDMDMLGGRSDYSSERLCCMVVVAIDL
Ga0307969_10211622	3300031334	Saline Water	VVCILKGWVVVCLVNYRVDVIDVLGGRSDYLCERLCCMVVVASDL
Ga0307969_11421662	3300031334	Saline Water	VYLVSSWVDDIDMLSGRSGYLCERLCCMVVVASDL
Ga0307951_10317454	3300031335	Saline Water	VYLVCYWVNDIDMLGGRSDYLCERLCCMVVVASDL
Ga0307951_10336614	3300031335	Saline Water	VYLVSYQVDNIDTLGGRSDNLCERLCCMVVVASDL
Ga0307932_10805181	3300031339	Saline Water	VYLVSYWVDDIDMLGGRTDNLCECLCCTVVVASDLRACGVIVWLTVC
Ga0307932_11239951	3300031339	Saline Water	VVYLVSYRVDDIDTLGGRSDNLCERLCCTVVVASDL
Ga0307932_11247471	3300031339	Saline Water	VVRNLNGWVVLYLVSYRVDDIDMLGGRSDYLCERLCCMVVVASDLRS
Ga0307932_11898691	3300031339	Saline Water	CNLKGWVVVYLVRYRVDDIDMLGGRSDFLCEHLYCMVVVISDL
Ga0307952_100579214	3300031343	Saline Water	INPKGWVVVYLVSYRVDGIDMLGGRSDYLCERLCCMVVCG
Ga0307952_10179731	3300031343	Saline Water	CNLKGWVVVYLVSYRVDDIDMLGGRSGYLCERLCCMVVVRG
Ga0307952_10265325	3300031343	Saline Water	VYLESYRVDDIDMLSGRSDCLCERLCCMVVVASDL
Ga0307952_10287812	3300031343	Saline Water	MCNLKGWVVVYLVSYRVDDIGMLGGRSNYLCERLCCMVVVASDL
Ga0307952_10920984	3300031343	Saline Water	VVYLVSYRVNDIDMLGGRSDYLCERLCCMVVVASDL
Ga0307971_11407691	3300031382	Saline Water	CCVLVSYRVNDIDMLGGRSYYLCERLCCMVVVASDL
Ga0307947_100504714	3300031387	Saline Water	VYLVRYRVDDIDMLGGRSDFLCEHLYCMVVVISDL
Ga0307967_100337515	3300031393	Saline Water	SAISKGWVVVYLVSYRVGDIDMLSGRSEYLCERLCRMVVVANDL
Ga0307967_10793944	3300031393	Saline Water	VVCNLKGWVVVYLVSYRVDDIDMLGGRSDYLCEHLCCMVVVASDLRAPVRSGLRYF
Ga0307967_10984122	3300031393	Saline Water	CWVVCNLKGWAVVYLVSNRVDDIDMLSGSSDYLCERLCCMVVVASDL
Ga0307963_10312212	3300031394	Saline Water	VYLVSYQVDDIDLLDGRSDYLCECLCCMMVVASDL
Ga0307963_10854083	3300031394	Saline Water	VRNLNGWVVLYLVSYRVDDIDMLGGRSDYLCERLCCMVVVAS
Ga0307963_11141661	3300031394	Saline Water	VCNLKGWVVVYLVSYRVDDIDMLGGRSGYLCERLCCMVVVASDL
Ga0307957_11221741	3300031395	Saline Water	LVSYRVDDIDMLGGRSDNLCECLFCMVVVASDLRACGAFV
Ga0307944_10868062	3300031396	Saline Water	VVCNLKGWVLVYLVSYWVGDIDLLCGRSDNLCERLCCMVVVASDL
Ga0307944_11072912	3300031396	Saline Water	ACNLKGWVVVYLVSHRVDDIVMLSGRSDYLCERLCCMVVVASYL
Ga0307944_11171061	3300031396	Saline Water	VCNLKGWVVVYLVSYRVNDIDMLRGRSDYLCGRLCCMVVVASDLFA
Ga0307960_11129592	3300031397	Saline Water	CWVVCNLKGWVVVYLVSYRVDDIDMLGGRSGYLCERLCCMVVVRG
Ga0307968_10106464	3300031399	Saline Water	VYLVSYRVDDIDMLGGRSDYMCELLCCMVVVASDL
Ga0307968_10238013	3300031399	Saline Water	VYLVSYRVGDIDMLSGRSEYLCERLCRMVVVANDL
Ga0307968_10321493	3300031399	Saline Water	VYLASYRVDDIDMLSGRSDYLCERLCCMVVVASDL
Ga0307945_10077513	3300031404	Saline Water	VYLVSYWVGDIDLLCGRSDNLCERLCCMVVVASDL
Ga0307966_10357304	3300031607	Saline Water	MVCNLKGWVVVYLVSYRVDDIDMLSGRSDYLCERLCCMVVVA
Ga0307946_10026994	3300031684	Saline Water	VYLVSYRVDDINMLSGRSGCLCERLCCMVVVASDL
Ga0307946_10074321	3300031684	Saline Water	VYLVSYRVDDVDMLGGRSDNLCERLCCMVVVASDL
Ga0307946_10389831	3300031684	Saline Water	VYLVSHWVDDIDLLGGRSDNLCERLCCLVVVASDLRACG
Ga0307943_10081818	3300031704	Saline Water	VYLVIYWVDDIDMLGGRSDSLCERFCCMVVVASGL
Ga0307943_10736003	3300031704	Saline Water	VYLVSYWVDDNDMLGGRSDNLCERLCCMVVVASDLR
Ga0307943_11198633	3300031704	Saline Water	WVVCNLKGWAVVYLVIYRVDDIDMLGGRSDYLCERLCCMVVVASDL
Ga0307943_11583412	3300031704	Saline Water	WCWVVCNLRGWVVVYLVSYRVDNIDMLSGRSGYLCERLCCMVVVASHL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F104106

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences