NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307494_1001718

Scaffold Ga0307494_1001718


Overview

Basic Information
Taxon OID3300031252 Open in IMG/M
Scaffold IDGa0307494_1001718 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SW 0.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1741
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F039389Metagenome164Y
F066838Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0307494_10017181F002374N/AMNQVLLYASVILASLSFFLCLYACARVGKLLNSVKGLEWDTVATLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYAIKQQNGAMHPPTDKLGG
Ga0307494_10017182F039389AGGAGGLAFLGDIGKVFGLGSSKQVLGDVGGFLGSGLGIEGAGRRLGESIASATNSVSTADQPFEQSAVPTGDPKQGMAQETSRSGSQTVNIIDTARGNGMTSQASFGMLAPFIAQAGKFLSSRTGQIATGVGTGALFAGGGQDGRMKPVLTQSRRNKAKVRQLVNFMGIEGTADFLSQQSGQNVSPNDVVMLLLRTFRNDGAFITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRAPVRRASSTTLIKN
Ga0307494_10017183F001611AGGAGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTTATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYTNNDLLTTGSQRNRVLVRFTNDTSGTRTIRCGVFIG
Ga0307494_10017184F066838GGAGGLGQEYFINSQDLESTVRKLLPSQGGAGAGIDLSASTQIIPIIDLTPTAEGSILRQDLQTSSSLTTITSFNIANANSTDLIINTGYWLV
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Institute for Fundamental Biomedical Research
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