Scaffold Ga0265325_10000025

Overview

Basic Information

• Taxon OID: 3300031241
• Scaffold ID: Ga0265325_10000025
• Source Dataset Name: Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 111160
• Total Scaffold Genes: 111
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 93 (83.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere → Rhizosphere Microbial Communities From Carex Aquatilis Grown In University Of Washington, Seatle, Wa, United States

Source Dataset Sampling Location

• Location Name: USA: Seattle, Washington
• Coordinates
  • Lat. (^o): 47.6516
  • Long. (^o): -122.3045

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002758	Metagenome / Metatranscriptome	532	Y
F022724	Metagenome / Metatranscriptome	213	Y
F049951	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265325_1000002529	F049951	AGGAG	MKSFIVACVIAVVLAVIGGVVLNSVPDSAEKTFSSSTGVRLGA
Ga0265325_1000002541	F022724	GGAGG	MPYASITALIFTLVAILHGWRIFKGWTVRLGPHSVSMTVSWVGLIVAALLAIWGFSLSG
Ga0265325_1000002556	F002758	N/A	MNRIKVAALVAFSALVALSAEAGQPDPKHGFSSFCDDEGDCATLKVAASKPSKARNSNADTSKSKPRRAVDANGNVMMVTVQTSYGFNITVHPAYAIKFQKLFALLKDRGYRVPAHITKCWAPRGTHVAGSNHYIGAACDIQTGWNRGPAFVYHMNDMVKKAGLYDGCAFHDCGHVEAVRGTHNKAPNLYASIEKFKSEQSTANYQP