NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0170824_104585778

Scaffold Ga0170824_104585778


Overview

Basic Information
Taxon OID3300031231 Open in IMG/M
Scaffold IDGa0170824_104585778 Open in IMG/M
Source Dataset NameCoassembly Site 11 (all samples) - Champenoux / Amance forest
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2114
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameFrance: Mazerulles, Grand Est.
CoordinatesLat. (o)48.7585Long. (o)6.3578Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022298Metagenome / Metatranscriptome215Y
F051325Metagenome / Metatranscriptome144Y
F053369Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0170824_1045857782F053369N/AMTETTFTLVRTNKSRGGGDDDYDVCDGDEVIGRIVRHPQAPMETPWFWVIIAERLSPSWLMDRGYAVSREHALAQFRARWTLEDLVCRRVVDLPTPPMPAFIARCVRCNAQIWVTLNSPSDVRRICSRCAEGVSRSPS
Ga0170824_1045857783F051325GGAMSRKDELLKLAQLFHSQARRAETPDAKRALHRMGQYYQNEAAHAPDRHAERQRKLRQFNRYPEQAA
Ga0170824_1045857784F022298GGGGGMDTVLFTDHGIVVFAITIGAIALMLMLAVLGLATTHRTRSDIEHQWLPVSADPINRQLELDEWNLLLNQFHALVRKGSDSIEDIFDAQFRHRFSRVIDQAAGWRRWDDREQ
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