Basic Information | |
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Taxon OID | 3300031165 Open in IMG/M |
Scaffold ID | Ga0228577_117424 Open in IMG/M |
Source Dataset Name | Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_16mM_2 (Metagenome Metatranscriptome) |
Source Dataset Category | Metatranscriptome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 522 |
Total Scaffold Genes | 1 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii | (Source: UniRef50) |
Source Dataset Ecosystem |
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Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Washington | |||||||
Coordinates | Lat. (o) | 47.6519 | Long. (o) | -122.3113 | Alt. (m) | Depth (m) | Location on Map | |
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Family | Category | Number of Sequences | 3D Structure? |
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F035605 | Metagenome / Metatranscriptome | 171 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0228577_1174241 | F035605 | N/A | REWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADQFATVPLPDCLIRMLSEQVIPNARDEDYSQRFADKILTLSEVQGA |
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