3300031165: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_16mM_2 (Metagenome Metatranscriptome)

Overview

Basic Information

• IMG/M Taxon OID: 3300031165
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0128781 | Gp0267098 | Ga0228577
• Sample Name: Metatranscriptome of Chrysochromulina tobin associated microbial communities from unialgal haptophyte culture, Seattle, Washington, United States ? P3_L6_16mM_2 (Metagenome Metatranscriptome)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 24810956
• Sequencing Scaffolds: 19
• Novel Protein Genes: 22
• Associated Families: 22

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	9
All Organisms → cellular organisms → Eukaryota	2
All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus	1
All Organisms → cellular organisms → Eukaryota → Haptista	1
Not Available	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa
• Type: Engineered
• Taxonomy: Engineered → Modeled → Simulated Communities (Microbial Mixture) → Unclassified → Unclassified → Defined Medium → Chrysochromulina Tobin Associated Microbial Communities From Unialgal Haptophyte Culture In Seattle, Washington, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): Unclassified
• Earth Microbiome Project Ontology (EMPO): Unclassified

Location Information

• Location: USA: Washington
• Coordinates
  • Lat. (^o): 47.6519
  • Long. (^o): -122.3113
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007565	Metagenome / Metatranscriptome	348	Y
F008473	Metagenome / Metatranscriptome	332	Y
F009790	Metagenome / Metatranscriptome	312	Y
F009840	Metagenome / Metatranscriptome	312	Y
F010978	Metagenome / Metatranscriptome	296	Y
F024700	Metagenome / Metatranscriptome	204	Y
F028443	Metagenome / Metatranscriptome	191	Y
F030342	Metagenome / Metatranscriptome	185	Y
F035605	Metagenome / Metatranscriptome	171	Y
F044865	Metagenome / Metatranscriptome	153	Y
F063286	Metagenome / Metatranscriptome	129	Y
F063376	Metagenome / Metatranscriptome	129	Y
F066385	Metagenome / Metatranscriptome	126	N
F069666	Metagenome / Metatranscriptome	123	Y
F074330	Metagenome / Metatranscriptome	119	N
F074505	Metagenome / Metatranscriptome	119	N
F076965	Metagenome / Metatranscriptome	117	Y
F080772	Metagenome / Metatranscriptome	114	N
F080775	Metagenome / Metatranscriptome	114	N
F095000	Metagenome / Metatranscriptome	105	N
F102393	Metagenome / Metatranscriptome	101	N
F103992	Metagenome / Metatranscriptome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0228577_100362	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	3082
Ga0228577_103348	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	1322
Ga0228577_106114	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	987
Ga0228577_106676	All Organisms → cellular organisms → Eukaryota	943
Ga0228577_107035	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	914
Ga0228577_107518	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	884
Ga0228577_108974	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	802
Ga0228577_109646	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	769
Ga0228577_110475	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales	733
Ga0228577_113178	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Prymnesiaceae → Haptolina → Haptolina brevifila	633
Ga0228577_113220	All Organisms → cellular organisms → Eukaryota	632
Ga0228577_113909	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Coccolithales → Calcidiscaceae → Calcidiscus → Calcidiscus leptoporus	611
Ga0228577_113985	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	609
Ga0228577_114303	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	600
Ga0228577_114717	All Organisms → cellular organisms → Eukaryota → Haptista	588
Ga0228577_116158	Not Available	551
Ga0228577_117424	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	522
Ga0228577_118096	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	508
Ga0228577_118127	All Organisms → cellular organisms → Eukaryota → Haptista → Haptophyta → Prymnesiophyceae → Prymnesiales → Chrysochromulinaceae → Chrysochromulina → Chrysochromulina tobinii	507

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0228577_100362	Ga0228577_1003621	F095000	DSLDAAAADSARASAVRVKLEAGFQHMIGANAVFEIEDFLQADALVCASHVFCAAGFEWKLWVKPYSGPNEEHVGLYLTPAEDLDQVYTADYALAIVGRQGHILQRALDGGRPKLQGRKAGHGWPTFVTRSELEASATDPASCLLQADGRLIVTCSGLSNVRPRMPQDDAAGLARTL
Ga0228577_100435	Ga0228577_1004351	F009790	AMSAPSGQWRSTNHGYNSKDVVLGAGFAQYTPGLCDDEVYQTVISGSLGNSGGYKKAVVGDGSGRMFGQTADAQQGGYNGAEMDEAMNNDMTGVTEAGYADKIATGFDKVAGDYSTLPRWMQEIFIKLRVLAKSEGIDMERTFQDAGGSRFGTISKRLFISALCIGFQHYRFSPAELDAIADAYGCGSDDIFNGGKMLVAWRDFVNDVLSAEVVAKEYEYSATDTDETDAGYSDGIATGIDKIAGGFDDLPPMLQQLCKDLRRMAKIEGISLEFSLQQAGGTRFGTMPKRHFCSALTIAFHHFKFTPEIYKELCDAYAVGPPDFAEGGKEEVAWRDFCNDVLSSGKDISAHGVQAIDLAAKYDPKKNASFNDSALAGLF
Ga0228577_103348	Ga0228577_1033481	F044865	SGGGGGAKFSLLNRGSSKQDGVATGIFADEGRERGSGGSRNPQLTVLPHASDIKWIDQFPYYPAYRYHSYRSYCGACSSILFLTILLLRFSTSIMDFVNRPPIVTEAREQFERDSTITYRLPRVGVQFRQNGWRPFNDPRYLSIIFEQGVIAMSGNVSYVDLGTHECAFVDRDGRLIADGAMCPLASGDAAGYLQGDFHDVTFAFVRARLARCDNGTDVEGKPLPGMCMMPSEIDRLVYDGVLYMFEQETDMRVDESSPFLRIRQWRREFISRVHLSTDVYFTVRKVTVEPKYIFDAYLPGFKAGDSFTLLHSTQETYTDFEEEAAQYAAFYFRLAPELIRQSRSYTSLFDLFETWGAIVAFLYLVFGLTARSFNAFHFNRQVRGLDLRKLDKGQFTPFGRLIDKSFQMPREFQSMTAD
Ga0228577_106114	Ga0228577_1061141	F102393	MLCCKPSKFNVTCWSFLTLLSACVILACAVTALDASKGFKDATMCILTNMADLKNSNMTGGNMTNVPVKLDPTVLNVASAVIDWWMYAMIAPGAAYFVILVIAVFFSCVAALCSKCCASVTSKAFIFLGWFVAVVTLAFFCVCAVLGIFTQIPMTEAFWIENVESPCNTSVVESTHQFNLANASAQDCVRLYGQSNCADSTQQLNNAAEQLTKFTLMCSCASAWLYKSKPLAAPGVVGALATLLAFFLSLGTCCTLACCYSFTAAMEKNEPKK
Ga0228577_106174	Ga0228577_1061742	F007565	MGTSAGFFGITYQGATNGLASVTLSIFNCDHPDDVAWCKHVFDYSTNNSGFLTKAKVPDFLRLFYRNRPQGNTLSGTYLYSYPENEKEFIDALFGKDGQLTFATLIEALKEAQGRFAEPAAPLEYGSAAVLRNDKTKHTRCVLNPQQRFRKPIATSQEVGWELYKEVKPELVASFNDTGGPGTPFRLRTSATTQFADAIEKITWGRSIGEFSAYATRKLVAFGGQGMGV
Ga0228577_106290	Ga0228577_1062901	F063286	EFHDFVKDAKLETRMINFTTMTNVFAKANASNTAEAFEQRQREKRNSQVQSELEDAAFTKNVNKPISPKKGAFPDVFLDKSGEMDLATMNKGKNAKPDNRLQLTEFLGCLVRISFLRANPKHGQYDNKAKLIELPGCLKKMLEEVLIPNAKQDMSSLFREEIAQDAEVQRVFDEYREKLTYYYNEVNQLTALKGKADNKLSMETWMDICRGYLHFAKRKGLKHMEKSKTSGKAGEGGGLGEGAFVGDCTVSRESDITGDERCKEKFTCRLSTLEAKFAFLNSQSLEQMTAGDSSDTDLMATLDFDEFIECLARCARDKYGEIKL
Ga0228577_106676	Ga0228577_1066761	F010978	ASCPSMPRESNPLERTSVQLMLVVAGIALFANSAVDRTDDGLPWEVTLAGFCVFAVVFCAIYAKKTEVALSIVTMIAIVMPTYYVHNYEVPASNWELGSMFPLKTSKEEVLRGCFKAAPNASRFDKMLPFDLSLAHFSVLPPGLALRVNTSEIYHSGLKLDDPLTKERTHDYLLFSSPRKVKEKTESLVLLARVPSKFEVWPKNIEDYSFSLQTASNIVAPPTMFGEVTKLDKGPAIEILQRKHHLRPFMLDVYRVEYVYE
Ga0228577_107035	Ga0228577_1070351	F028443	DAQVKGIGISAPTSRQAKKDATADMQLNLFEFINFLVRTAFWRANPQWGSKYNKKDLTPVPESTQILLEECILPKAKRDTSGEFKKVLASDASTQAVLGEYREKLQNWLRPILRKERTTQNPNPQMTYSLWVALMDGPDSEQKESGKKPPCPKMVGEWSVQQESQITGDERTSRKNQITFKAALSIPQCRWNFLRSQTIEQVEAGDVDADSSAVATLDFTELGECIARCAVNMYEHLMKTFLPSHDRKAMTMADATRSFLRNLLSEKTPEMCMWEATVIKADRYDWQKQTKMLPGFSPAQHKLW
Ga0228577_107518	Ga0228577_1075181	F066385	QKPEPAFTYIMATTAIRELQMAALPAAVGTVAILYSNLANMFAMGKFRYANKGVEVHPYKPWSDTTPNAEEHFRAYKAFENGMEWTVLAVPALWLYVLYTPAVPHVGKFLPWTGALLAAAFAYYNTKYLEGYAQSVEARLPPFKARTNALMVLFTGALASMAASFLTTIGIVKMITPKVCERM
Ga0228577_108974	Ga0228577_1089741	F008473	IEMLSKRGLTDGFRRIDDDHKGSLTAEELKRFFMEEAHCPWFINDRTLWCLCDFADLNNDDEIGFLELSQVLLCQDIIQFAALVPNKKKEAQAEKDNSMKIGSRGCTVAQVREAQRECCNALINRGSGDLRQNNVRSVLAYLDVREDGMITRDEFFEKMKLLKVLKHMTSEKKVKGTIEKAALETMLDIVDEVARKIEEQMPGDQGGAVAAGYLNLAAFAKGCFSTDGFGGFVDVMTIAGIQ
Ga0228577_109646	Ga0228577_1096462	F074505	VKILIRKRRISCVPFFLRGGTGRRCRAPWRLQTRSGRPVRASRRRPWSMLATARANRTDGEAEAGAAEAEKSKKARVTLPVLSVLQTVLQHAAEALADKTKELTDVLGSINNDQLVAEPDVWLQHCPQGTARRTADGSRTAQIASHGRLTACRSRLMRYPDRADDRRASLFLRRGALCILACVVQGILCA
Ga0228577_110475	Ga0228577_1104752	F080775	LVLEAELKEIDEDIASNESMSRKYGAEFFTEGAARLAQSRAEKQQKLAEIKQQLAETSTSVRQGKQLLGALAENYGNMAPPTYINPEGGQLYTQQFVTTRGDSPARVLTTSPILADRRG
Ga0228577_113178	Ga0228577_1131781	F030342	YIHAERYNWKLSKPLPGQTLAAHRKWLDCWQNIEIGDLHYFPLWEKGVFDCLQECFQDLTNIFAHYAKSIGGSTTAEDAVEMTMTEFKELVKDVGLETKDLKFDVMSNMFKKANATNSGDVRKQRMVEKGNADAQGEFAMNTGTQMALKKNIQQASPKRNAKLNKIRDDELDQELVLYEFVEVMIRIGFWRANPFHGINKLAAKLVPLPDC
Ga0228577_113220	Ga0228577_1132201	F024700	GGSAGRRVALMPPKGTPRVSSLYADMDLTGVVSTLESHWVVLDAELSEIRKDFAVLRALTRKHGEFWMRPMAQLKKLRTQKENLLKEIKFQMELFNLHIQQGRDLCTKLSSVASVIKTPPAQLQSQLAIEVVSPILANSQNPLPVTNAW
Ga0228577_113909	Ga0228577_1139091	F063376	DVVVHFTDGGVNTVHRPISTLPCKWAGMGKPADCGEYSYGVGNPYGFGWAAKGFTQDPKPYQLAALKIQPWEREPDTRSGEKPEPLAGTLTAYELTPGATYDIYRWDSVKEAFTYTNEYKKITFAATTDTYVYTDDKSFMSEGTTYYRVVKA
Ga0228577_113985	Ga0228577_1139851	F069666	QLGEITDLDVEQLIEAGRPGDAAAAGRILPGLARLHGYGYVVDVAAVRAANLRNSLGDRTGILGGTAKAVLNSCISGEGEPPLRLTIAAIACAGSGVICGIPVQRMREDSVTTLDLSDRGLHVAAAMLVAYLLPATSVLKNCKLLKYRYNLGIQPAMMLAKIGAERGIMLSGIMLTDQKEADLSCQDLQPADAILIASDLKF
Ga0228577_114303	Ga0228577_1143031	F074330	MVLNPTSTGFLLLASVVVLIASLFLTYDPVDLCAASNGLKFCVGFNNAYAFVMCIMEIIVCVVALFMLKMKQAILQKVLVAKAPLIGPITVEGLISLFLFVNITIGAFILTNMPEHGFDQTNNGYFACWAGACASLGNIGVDPAKMVDDLRAKTGVSPAFGLIISSIMVLLQSYPYLAFDPTQMPADGGPWRPVPV
Ga0228577_114717	Ga0228577_1147171	F080772	HDPIPKPGSKLRARIKDPGLDPVIAMTRERHKKELQIEAQKLVVSGLTGAVLHKMLELKAVEREILELTEGVQEYQDQIDLLNDRKHDVQKNQVEKAAWCATFDKLIGPFEAKYEECKGEVKVSFDYAKSKYAISLQQLIDDFGFNPTYKRWFDEF
Ga0228577_116158	Ga0228577_1161581	F009840	VVAQLEASTPKEERNAAGDKADHFPKIAFEGSQGQGKKIVFTVPHENLSPPGFSYIEYMWIKDESSGDILTAKKFTQSDPNLVITAYGNSGQKLTAASKDNKFGIWEGTFLVP
Ga0228577_117424	Ga0228577_1174241	F035605	REWLMTWEMLQLSALPGFPLWEKDVHDVLAGNLESLTSIFRAYAASSLEGSATEMDMEEFHDFVIEAGLITDMYSFDTMSGQFTKANAGSNDTVLELHEFLTMLVRISFFRANPQYGMRKGKDQKNADQFATVPLPDCLIRMLSEQVIPNARDEDYSQRFADKILTLSEVQGA
Ga0228577_118096	Ga0228577_1180961	F076965	YRMWAELMDGPEPNANAFSRAKAACPKMVGEWFLTQESQITGDERTSKKNQMTFKASLSLAQARWNFLRSQAIEQIEGGEVDAEGGKDGQGQGTLDFSELNECICRCAVNMYEHLLDTYLPSHNRKAMTMADAVRSWIQNLFFEKSPEMCMWEATVIKADRYDWQKQTK
Ga0228577_118127	Ga0228577_1181271	F103992	ASPRGVHERGPRPERSALEMGESAAYVLKGIEDMLQTEVKYFSMVCKDGEKMYICLGKRALFLIDFEPPFQEQFYYAWVRRVIIDSDNLLLFQIDFHEGRQSLLLESFERSRLCDELAICWKADAMFRQWRWQPFPLKRGQCDVGRRDRARTAVEFTAAPQKMQRIEFK