NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310821_100026

Scaffold Ga0310821_100026


Overview

Basic Information
Taxon OID3300031145 Open in IMG/M
Scaffold IDGa0310821_100026 Open in IMG/M
Source Dataset NameSorghum-adapted microbial communities from Joint BioEnergy Institute, Emeryville, California, United States - P4_Day56_Rep1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)317340
Total Scaffold Genes326 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)204 (62.58%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Engineered → Lab Enrichment → Defined Media → Unclassified → Unclassified → Growth Medium → Lab Enriched Sorghum-Adapted Microbial Communities From Joint Bioenergy Institute, Emeryville, California, United States

Source Dataset Sampling Location
Location NameUSA: Emeryville, California
CoordinatesLat. (o)37.8406Long. (o)-122.2901Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064527Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0310821_100026248F064527AGGAMSTMRDPADRVRTLLLRADNVLKNEGDPADRARRARAALEEARSVAAGGGVDPRVVELIERRLTALEAGGPG

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