Scaffold Ga0170834_110063448

Overview

Basic Information

• Taxon OID: 3300031057
• Scaffold ID: Ga0170834_110063448
• Source Dataset Name: Oak Coassembly Site 11 - Champenoux / Amance forest
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1176
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: France: Champenoux
• Coordinates
  • Lat. (^o): 48.7184
  • Long. (^o): 6.3471

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005822	Metagenome / Metatranscriptome	389	Y
F064903	Metagenome / Metatranscriptome	128	N
F066496	Metagenome / Metatranscriptome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0170834_1100634481	F066496	AGGAG	MSEKNQIVVVLVVALSLGAFVDRITALKIVAGVALLWTLQ
Ga0170834_1100634482	F005822	AGGA	MSVNGTEAIAESKGPQPPPANGRATRVAADSKATPARGMTTRRRRDRQDSEKSAEERFFLATGSRNGDLPALGRECTSEADAIINAFREQVNFYRVSEFQTRADVGPSGEPILRKDGLKKNNPAS
Ga0170834_1100634483	F064903	GAGG	MRLLFPSNYDRADVLMSAGCSTLVSAALILVIPRIGVLLLEILFGLFFIGCALMARARVRRRALGKEGHKKSSDAQAKWFDRYDVLMILAVIAVQTATGGLLRKAGWSEGTVSILPLIMFAAGILLKPRVVEFVERRRKTHPADADCRSTAAQPENLDPTDRALGPE