NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0073998_10135073

Scaffold Ga0073998_10135073


Overview

Basic Information
Taxon OID3300031023 Open in IMG/M
Scaffold IDGa0073998_10135073 Open in IMG/M
Source Dataset NameMetatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil TCEFA (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1163
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location
Location NameUSA: Montana
CoordinatesLat. (o)46.9233Long. (o)-110.871944Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F068861Metagenome / Metatranscriptome124Y
F097372Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0073998_101350731F097372N/ATTISIGHTEGHFLSSKQFAVLEECADTLESLESVAGIDTPSSSAVTQASTEEDGVRSRKLQLAREIKQKQIQLTAASPGNRSQINLEIGKLLSERSKLDKLIKQFDTATIV
Ga0073998_101350732F068861GAGGLINSSNSLILQQLFEMTSLTATRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPVGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCEFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFKGKYTLHGRY
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