NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0265768_106968

Scaffold Ga0265768_106968


Overview

Basic Information
Taxon OID3300030963 Open in IMG/M
Scaffold IDGa0265768_106968 Open in IMG/M
Source Dataset NameMetatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU5 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)681
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location
Location NameNorway: Oslo
CoordinatesLat. (o)59.9989Long. (o)10.7903Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002584Metagenome / Metatranscriptome546Y
F101564Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0265768_1069681F002584N/AMPVKPPPLVAPDSGGQSSEGFSCVSARAKDTVRRVRAYFRGRGSADLESITKEAKALTPAQWSAALPEQRRNGKLVYLDRPSLERIADPRGDPFDTVYRQELVALVEAQLPPEQIPYLDAFLADDDPRDIAPRLGISAKAASARMKRFKAKLGVIYSGLTTRIKAPP
Ga0265768_1069682F101564N/AMNIDRVRKELQESALREFPNPERVGCPDAETLARMSRRIIQMTQDQLH
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Institute for Fundamental Biomedical Research
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