Scaffold Ga0265743_115707

Overview

Basic Information

• Taxon OID: 3300030885
• Scaffold ID: Ga0265743_115707
• Source Dataset Name: Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSI5 (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 564
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil, Plant Litter And Rhizosphere Microbial Communities From European Coniferous Forests

Source Dataset Sampling Location

• Location Name: Norway: Oslo
• Coordinates
  • Lat. (^o): 59.9989
  • Long. (^o): 10.7903

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001975	Metagenome / Metatranscriptome	609	Y
F037758	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265743_1157071	F001975	AGGAGG	MASTTPTQELQDQFLAIVRKSQEMALEAIKTMVDSVQTITPKIPSVDMPFADRMPKPQDVVASGYDFAEKLLTSQRKFANDVVKAAAPLLPGNGESK
Ga0265743_1157072	F037758	AGGAGG	MANAPTQDLQNEILTTVRKSQETVIDAIRTWVETVQSITPKVP