NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308203_1058732

Scaffold Ga0308203_1058732


Overview

Basic Information
Taxon OID3300030829 Open in IMG/M
Scaffold IDGa0308203_1058732 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)597
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006769Metagenome / Metatranscriptome365Y
F051325Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0308203_10587321F006769N/AMKPEELFRNAPANIHELRLALAGLPKDIMEVKADAETGVPEKTVDELWARTTWPLGLVITTPRKLRTRSVVKIRNNRKTSPTKADHPIVKVFQQL
Ga0308203_10587322F051325N/ALEGSKAAMSRKEELLKLAKLFHSQASRTGTRGVKQTLHRMGQYYQNEAARAPDRDPERQRGPRQFNRYPEQAA

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