Scaffold Ga0138305_1135327

Overview

Basic Information

• Taxon OID: 3300030758
• Scaffold ID: Ga0138305_1135327
• Source Dataset Name: Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_OS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2468
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Riboviria → Orthornavirae → Kitrinoviricota → Alsuviricetes → Martellivirales → Togaviridae → Alphavirus → unclassified Alphavirus → Fusarium sacchari alphavirus-like virus 1 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: South-western Pyrenees, Aspurz, Spain
• Coordinates
  • Lat. (^o): 42.0
  • Long. (^o): 1.0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F068861	Metagenome / Metatranscriptome	124	Y
F097372	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0138305_11353272	F097372	N/A	VNSITSGLLNYNFSTIEMSDESIAHTIRNILEQCNSTIISIGHTEGHFLSSKQFAVLEECADTLENLESVAGVDTPTTSAITQASSEEDGLRARRLQLARELKQKQVRLTAAAPGDRSQINLEIGKLLSERAKLDRLLKQLDTIS
Ga0138305_11353273	F068861	N/A	VKMPSATASRLIAEYGSDQDYKFAGAVQVKTATTLTTTFGAVMRYEPWTNAGAKELLKHHPIGVWKELSVRLAPRPGIYGRMCTFYGGWAAAGVVTPTTAEEMVALHGAIDVTYGGTGDPGTVKVQIPCDFDDTMKDLLKGPDNDNSRPVFFYAFTETDVVDKPANSDRFMLTFRGKYTLHGRY