Scaffold Ga0265459_10975885

Overview

Basic Information

• Taxon OID: 3300030741
• Scaffold ID: Ga0265459_10975885
• Source Dataset Name: Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ANR Co-assembly
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 884
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From France, Sweden, Spain And Usa, For Metatranscriptomics Studies

Source Dataset Sampling Location

• Location Name: Canada: Quebec
• Coordinates
  • Lat. (^o): 47.2662
  • Long. (^o): -71.2166

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015233	Metagenome / Metatranscriptome	256	Y
F055057	Metagenome / Metatranscriptome	139	Y
F075151	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0265459_109758851	F075151	GGCGG	MVTRSASPGLLGLEPAGQRLSLAVARLPGGATAVLADLKRWSRSATGRSAALFAVIAGTYAVGAELGWHHFSSGLAFGYPPSGVDVAVLLHREVK
Ga0265459_109758852	F055057	GGA	MWVAVRGKRTIVASSPEKLTEQVEAATRGESGPDEGEKTQKWRALRKHERG
Ga0265459_109758853	F015233	AGGGGG	MPDDNAGTADDTRTLRARFPRWGILFDPLESMWVAVRGKR