Scaffold Ga0187757_1023354

Overview

Basic Information

• Taxon OID: 3300030698
• Scaffold ID: Ga0187757_1023354
• Source Dataset Name: Metatranscriptome of Jellyfish Cassiopea xamachana and symbiotic dinoflagellate Symbiodinium under thermal stress from Pennsylvania, USA - 33_T1F_2612EL1 (Eukaryote Community Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 619
• Total Scaffold Genes: 1
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated → Metatranscriptome Of Upside-down Jellyfish Cassiopea Xamachana Infected With Symbiotic Dinoflagellate Symbiodinium From Hawaii, Usa

Source Dataset Sampling Location

• Location Name: USA: Pennsylvania
• Coordinates
  • Lat. (^o): 40.7982
  • Long. (^o): -77.8599
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F096614	Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187757_10233541	F096614	AGGAG	MCPLPDSRCQAAEGVLPSIADLLLNVLSYLRAASLSQLLYSSHEAELWVRMYLPALVDKRGWGNADLSANPLSTLHLSEMWDVLANVCSPIGVNFMLLRHTFYGTMLELQLSPGSTLAHFNFRASDEAAPMWCRGSFAVRGALQCGKWTDELRQRPRRTPITQDSLAKQSSYRVEHCGDRFVLR