Scaffold Ga0311354_10112842

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0311354_10112842

Scaffold Ga0311354_10112842

Overview

Basic Information
Taxon OID	3300030618 Open in IMG/M
Scaffold ID	Ga0311354_10112842 Open in IMG/M
Source Dataset Name	II_Palsa_E3 coassembly
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	3019
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Sterolibacteriaceae → Sterolibacterium → Sterolibacterium denitrificans	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa → Peat Permafrost Microbial Communities From Stordalen Mire Near Abisko, Sweden

Source Dataset Sampling Location
Location Name	Sweden: Abisko, Stordalen Mire
Coordinates	Lat. (^o)	68.3535	Long. (^o)	19.0473	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020571	Metagenome	223	Y
F095792	Metagenome / Metatranscriptome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0311354_101128421	F095792	N/A	AYLGLFGWFRSNALEGGVSDIIDHVPWDSLFFIVIAMPLVATLVGWVLAGREPSSIATRPLE
Ga0311354_101128422	F020571	AGTAGG	VTIRSDAGTVKEVRSLSSNGVRTHGRRMRARFAVHLCLLATFAASLTTVTLIIEGWPHLVVGFAFVALVCVHVTQRRHTVARLLGNLGRARMWFRRRGRLAWSDVVLALLTLNVLVSGTYDVLSGNQVILHPRDVGIPFRDIGWHVASALVLLVYLCVHVARRWGRIRRSAIR

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