Scaffold Ga0299915_10000027

Overview

Basic Information

• Taxon OID: 3300030613
• Scaffold ID: Ga0299915_10000027
• Source Dataset Name: Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT92D227
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105280
• Total Scaffold Genes: 101
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 63 (62.38%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Uranium-Contaminated Sites Across The Upper Colorado River Basin Region

Source Dataset Sampling Location

• Location Name: USA: Wyoming
• Coordinates
  • Lat. (^o): 42.9888
  • Long. (^o): -108.3994
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F036187	Metagenome	170	Y
F047871	Metagenome / Metatranscriptome	149	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0299915_1000002722	F036187	GAG	MLVGELDEVTYDLEVDGEEVRRTIHRKVFERRGWATVAIVFEERGKDGVWKPAKLALIRLQKVREAWKKHAAITLAGPDAVSLADSISTWKAAFSVDDSDAD
Ga0299915_1000002724	F047871	N/A	MWGYAEGNETALLIVVVIVAIAALAYVFRRYLGGK